Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3359 ATGGATGTTAATCTTAATCTTGAACTTGGATTAAGAAGCTATGTGCAAAAGAATGTGAACAAACCAATGGTTAATTCAAAAGAGGAATTAGCCATTGATTTTAACCATGATAAGGGAAATGAATTGAGTTTGAAGAGAGTGCATGAAGAAGAACAAGCACACACAATTGAAGAAGAAATTGCTATTGACACCACCAATGACGACAATAATGGGTCTACAAAGAAACTGAGGCTTACAAAGGAGCAAACAATCATGCTTGAGGATGCCTTCAAGAATCATCACACAATTAACACCGCTCAAAAACGGGCACTTGCTGAGGAATTGAATTTAAAGCAAAGACAAGTTGAAGTTTGGTTCCAGAACAGAAGAGCAAGGACTAAGCTGAAACAAACAGAGGTAAATTGCATACTCTTGAAGAAATGTCATGATAAATTAAGTGAGGAGAATCTTAGGTTGAAGATGGAATTGGAAGAGTTGCGTGCATTAAAAGTTGGACCATCAAACACAACTCAATCATCCAAAGCTGCAAATTGGACCATTTGTTCATCATGCAAGAAAATATGGAAGCCCAATGAGGAGGATGTGGCTAGAAAGAGCAGCCACAGCACCATAGAGTTAGATTAG 624 0.3782 MDVNLNLELGLRSYVQKNVNKPMVNSKEELAIDFNHDKGNELSLKRVHEEEQAHTIEEEIAIDTTNDDNNGSTKKLRLTKEQTIMLEDAFKNHHTINTAQKRALAEELNLKQRQVEVWFQNRRARTKLKQTEVNCILLKKCHDKLSEENLRLKMELEELRALKVGPSNTTQSSKAANWTICSSCKKIWKPNEEDVARKSSHSTIELD* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3359 207 SMART halz 129 172 IPR003106 GO:0006355|GO:0043565
Mal4g3359 207 CDD homeodomain 74 130 IPR001356 GO:0003677
Mal4g3359 207 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 13 195 - -
Mal4g3359 207 Gene3D - 65 134 - -
Mal4g3359 207 Coils Coil 142 162 - -
Mal4g3359 207 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Mal4g3359 207 Pfam Homeodomain 74 127 IPR001356 GO:0003677
Mal4g3359 207 SMART HOX_1 71 133 IPR001356 GO:0003677
Mal4g3359 207 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Mal4g3359 207 SUPERFAMILY Homeodomain-like 68 130 IPR009057 -
Mal4g3359 207 PANTHER - 13 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3359 Mal-Chr4 98374292 98376181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3359 66 201 Homeobox Transcription Factor Family AT4G16780 51.471 9.55e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Mal4g3359 Homeodomain 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3359 K09338 - gmx:100790522 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5194 5 125845215 125846367 Mal4g3359 4 98374292 98376181 PCT