Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3346 ATGGTTGTTAATTTGTTGTTGTTCATCGCAGTTTATAAGTTTGTTCCTTCTAGTGGATCATGGGATCAAGAAGTGGAAAAGGAAGATAAAGTTTGGATGAAAGAAGATGGGAATGATAATTTTGAAGTTGATGACATTGATCCAATGAAATGGATGCCTTCAAAGAAGAGAATTATTCAGAGAATGATGAAGGATCAAAGTGGTTCTTCAAACAACAACACTGTTAGGGTTTGCACTGATTGCCACACAACTAAGACCCCTGTTTGGAGAAGTGGACCCACAGGTCCTCAGTCACTCTGCAATGCTTGTGGAATTCGACAAAGGAGAGCGAGAACATCTGCAAATGGTGAGTCTTCTGAGAAAAAACCTTATGTGAAGGGAAAGAATATGCAAATCAAAAGGAAAAGCTTGAGTGACAACTTGACTTCCCATCAAGGTTTCCCTCAAGATGAGAAGGACGCTGCAATTCTACTTATGGCTTTGTCTTCTGGCTTACATCATGGATAA 507 0.3964 MVVNLLLFIAVYKFVPSSGSWDQEVEKEDKVWMKEDGNDNFEVDDIDPMKWMPSKKRIIQRMMKDQSGSSNNNTVRVCTDCHTTKTPVWRSGPTGPQSLCNACGIRQRRARTSANGESSEKKPYVKGKNMQIKRKSLSDNLTSHQGFPQDEKDAAILLMALSSGLHHG* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3346 168 MobiDBLite consensus disorder prediction 113 127 - -
Mal4g3346 168 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 128 168 - -
Mal4g3346 168 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 17 119 - -
Mal4g3346 168 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 71 112 - -
Mal4g3346 168 SMART GATA_3 72 124 IPR000679 GO:0006355|GO:0043565
Mal4g3346 168 ProSiteProfiles GATA-type zinc finger domain profile. 72 108 IPR000679 GO:0006355|GO:0043565
Mal4g3346 168 MobiDBLite consensus disorder prediction 109 133 - -
Mal4g3346 168 ProSitePatterns GATA-type zinc finger domain. 78 103 IPR000679 GO:0006355|GO:0043565
Mal4g3346 168 Gene3D - 72 139 IPR013088 GO:0006355|GO:0008270
Mal4g3346 168 Pfam GATA zinc finger 78 112 IPR000679 GO:0006355|GO:0043565
Mal4g3346 168 CDD ZnF_GATA 77 136 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3346 Mal-Chr4 97998738 98000631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3346 63 164 C2C2-Gata Transcription Factor Family AT5G49300 38.793 1.37e-19 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal4g3346 GATA 5.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3346 - - gmx:100810090 141.739