Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3318 ATGGAAGATCACGTGGAAGTTGCTCGTCCTTTTGATGATATCAAAGACATTGATGAGACTAAGGATGTTTGGACTCTTGCTGTTAGGATTGTTGATCTTTGGTCAGTTATTAGCAAATATAAGAGTGAACATGTTGAAATGGTCATTATGGATGCAAAGAGTTCTAAGATTCAGCTTACTCTCCCTAAGGAATTTATGTCTGAGTTCAAAGAGATTCTACATCATAACAAAACCTATGAGATGGAGAACTTCAAAGTCAGCAACAATGACATTGTAGTCAAAGGGAGCAATCATCCATATAGACTCACTGCCACAGGAGCAACAAACATCACTCAACAAGATTTCCCAAACATCCCTATGGAAACTCTAAATTTCAAGGATTTTGGGGATGTTATTGCAGGGAAATACAGAACAGATTTGATAGTGGATGATATTGGAGCCTTTCAAGAAGTTACCAACACAAACAAAAGTGGATCAAACCTGAGATCCATAACTTTTTTACTTAAAGATGCTAGTGCCAATTTCCTTCACTGTTGCCTTTGGGACGATTATGCAAAGAAATTTTATGATATGTTGTCTCGCTCAAATGGTACTAATCCTGTTATCGTTGTTATCAAACATGCAAGGGTTAAGCCAGAACAAGGAAATTATCCTCTATGTTTTACCAATACCTGGGATGGCACACAAGTTCTATTTAATCCTGATTTACCAGAAGTTAATGAGTTCAAAACTAAGTTTGAAGCACTACCTAACAACGATGCTGGTCCTTCTCAAAATCCGTCCCAGTTTAGCCAAGGGTCTACACCGCTTGATATCATGTCTAGAGCTACATTCCTAAGCCTTGCTGACATTAATCAAATTCAGAAGGAAACCGTTTGTGTCACAGTTGCAGAGATAACAAAGCTTAATGCAACCAGATATGGATGGACATATGATGGATGCAAGGAGTGCACCAAAGTTTTGAAGATGGACAATGGGAAATTGAAATGCAGAGATGGGCATGTCAATGAAAAGCCTATACCAAGATTAATAATTCCATTGCTATATCAGCATCAAATGCCAATTAATGTGTGTAGATACAAAGTTGAGGTGCAAGCTGTGCATAAGAAGGACAAAGCCAGGTTTTTATTTTGGGATACCGACTGTGCTTCCATTTTGAAAATCTCTGCTGCAAACTTGCGAGAACAAATGATTCAGGCTGGCCATACCAATCCAAGAACCTATCCGAAACTTCTCGATAAGCTCATCTGTAAGAAGAAGATTTTTAAAGTCAAAGCGACACCTGGTCCGAACCCATGTTCCATCATCCAAATCAGTGATAGCGAGCAATTGTTGACAAATCTTGAAAAACAATTCGGACTCGAGGAGGAAACTACAAGTAAGGAACCAATTGCGTTTGAATCTGTTTCCGAAGGAAAAGAACCAACCATCATAGCTTCCAGGCTCTCTCTAGATGAGATTGACTCTTTTGCAATTCAGCCTTCTGTCACTTCATCTGTTGCACAGGATGTTCAACCAACTCAACTTTCATCAACTAAGTTGGTTAAAAATCCAAAAAATGCCAAGACTCCAAAGCTGGAGAAGTAA 1587 0.3888 MEDHVEVARPFDDIKDIDETKDVWTLAVRIVDLWSVISKYKSEHVEMVIMDAKSSKIQLTLPKEFMSEFKEILHHNKTYEMENFKVSNNDIVVKGSNHPYRLTATGATNITQQDFPNIPMETLNFKDFGDVIAGKYRTDLIVDDIGAFQEVTNTNKSGSNLRSITFLLKDASANFLHCCLWDDYAKKFYDMLSRSNGTNPVIVVIKHARVKPEQGNYPLCFTNTWDGTQVLFNPDLPEVNEFKTKFEALPNNDAGPSQNPSQFSQGSTPLDIMSRATFLSLADINQIQKETVCVTVAEITKLNATRYGWTYDGCKECTKVLKMDNGKLKCRDGHVNEKPIPRLIIPLLYQHQMPINVCRYKVEVQAVHKKDKARFLFWDTDCASILKISAANLREQMIQAGHTNPRTYPKLLDKLICKKKIFKVKATPGPNPCSIIQISDSEQLLTNLEKQFGLEEETTSKEPIAFESVSEGKEPTIIASRLSLDEIDSFAIQPSVTSSVAQDVQPTQLSSTKLVKNPKNAKTPKLEK* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3318 528 CDD RPA1_DBD_B_like 143 244 - -
Mal4g3318 528 Gene3D - 116 253 IPR012340 -
Mal4g3318 528 PANTHER REPLICATION FACTOR A 1, RFA1 43 397 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal4g3318 528 SUPERFAMILY Nucleic acid-binding proteins 10 112 IPR012340 -
Mal4g3318 528 Gene3D - 265 450 IPR012340 -
Mal4g3318 528 SUPERFAMILY Nucleic acid-binding proteins 123 246 IPR012340 -
Mal4g3318 528 SUPERFAMILY Nucleic acid-binding proteins 284 427 IPR012340 -
Mal4g3318 528 Pfam Domain of unknown function DUF223 46 139 IPR003871 -
Mal4g3318 528 MobiDBLite consensus disorder prediction 501 528 - -
Mal4g3318 528 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 43 397 - -
Mal4g3318 528 MobiDBLite consensus disorder prediction 501 518 - -
Mal4g3318 528 Gene3D - 9 112 IPR012340 -
Mal4g3318 528 CDD RPA1_DBD_A_like 25 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3318 Mal-Chr4 96900322 96902796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3318 24 247 Core DNA Replication Machinery Family AT4G19130 22.581 9.87e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3318 - - mtr:MTR_4g085760 600.897