Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3300 ATGGTTCTTCAAAATGATATTGATTTGTTGAATCCACCTGCTGAGCTTGAGAAGAGGAAGCATAAGCTTAAGCGACTTGTGCAATCTCCTAACTCATTCTTCATGGATGTCAAATGTCAAGGTTGCTTCAATATAACAACTGTATTCAGTCACTCCCAAACTGTTGTGGTTTGTGGTAATTGTCAAACGGTGTTGTGTCAACCTACTGGTGGCAAAGCAAGATTAACAGAGGGCTGCTCTTTCAGGAAGAAGGGAGATTAG 261 0.41 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3300 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Mal4g3300 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Mal4g3300 86 Gene3D - 5 85 IPR023407 -
Mal4g3300 86 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 2 85 - -
Mal4g3300 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
Mal4g3300 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
Mal4g3300 86 PANTHER 40S RIBOSOMAL PROTEIN S27 2 85 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3300 Mal-Chr4 96383030 96384516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3300 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 96.512 3.23e-60 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3300 K02978 - thj:104799991 176.022