Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3249 ATGGTGCGGGTCGTTCGACTATGGTTTGTTAAGGATATGAACAAAGACAAGTTACCTTATTCATTGGAAATGATTCTGATGGATAAAAAGGGTGAACGAATTCACACATCAGTTAGACGTACTCTGATCTACAAATATGAGAAAGAATTGACCGAAGATTGTGTGTATTCTATTGGAAATTTCAGTGTTGCTTCTAATGTGGGGTCCTATAGGACAACACGACATCCATACAAGATTAACTTTCAGTATGGAACCAAGATCAAACAATGTGATCAAAAATTGGTCCCTCCTGACATGTACAAGATCAATGATCCTCGAGAGATATTTCAATCTGGATATGATACGGATTATTTGGTTGATGTCATGGGAATCTTGAAAGCAGTCGGTGTTGAGAAGTCCTATACCCGCAGCGGGAGTCCCATCGAGTTGGATTATGATGGGTTTCGTTTCAAGGTTACTTTGTTTGGATCGTATGTGGACGAATTGAATGCTTTTGTAGCATCTAGTGAGACGGTTACTGCTGTGGTTGCCATCCTTTTGACCAAAATCAAGCTATTTCAAGGTCAGGCGACTATACAGAATACCCTTTATGCTACAAAAATGATGTTCAACCCAACTTTCTCAGCTGCAGTGAATTTAAAGAAAAGGACTGTCGAGAATGATAATTCTCCTTCTCATGGTATTTCTAAGATTGTGGATGCATCTAAAGTTAGTATTGAGGAAGACTTTCTCAATTTGACACCGATGACCACCATTGAAGGGCTTACGGATTGTGCAACGGAGAAAATGTTTGTGGTGTTTGGTACTGTAAATGTTATTGTTGATGATTCTGATTGGTGGTATACTGTTTGCGTCTGTAACAAAAAAGTATATCCTGATGAGCGGATGTACTTTTGTTCAAAGTGCAATAAACATGTGTTGAATGTGACACCGAGGTTCATGATCAAGATTAGAGTTATTGATCATAACGACTCAGCTACGTTTGTGCTATTTGACCGCGATGCTTCTGAATTATTTAAAAAGTCGTGTGTTGAAATGCTCGACTCTGATGGAATGGGAAATGATGCGTCTAATATCCCCCAAGAAATTGCTGATATGGTGGGGAAATCATACCTGTTCAAAGTGGAGTCAAATATTAATTTTGTTGCTATGTATGAGAAATCATATCGGGTGAAGAAAGTTGCATCGGATCCTGTATTAGTTGGGAAGTTTAAGACTAAATATGATGATTTGATGAAGAATGGTCGTGAAGATGATGTTGGTTTGGATGATGGTGTTGCTAATCAGGGTGAAGATAATGTTGCTCTGGTATGTGTTCTTAAAATATTAGTGATATCATGA 1341 0.3833 MVRVVRLWFVKDMNKDKLPYSLEMILMDKKGERIHTSVRRTLIYKYEKELTEDCVYSIGNFSVASNVGSYRTTRHPYKINFQYGTKIKQCDQKLVPPDMYKINDPREIFQSGYDTDYLVDVMGILKAVGVEKSYTRSGSPIELDYDGFRFKVTLFGSYVDELNAFVASSETVTAVVAILLTKIKLFQGQATIQNTLYATKMMFNPTFSAAVNLKKRTVENDNSPSHGISKIVDASKVSIEEDFLNLTPMTTIEGLTDCATEKMFVVFGTVNVIVDDSDWWYTVCVCNKKVYPDERMYFCSKCNKHVLNVTPRFMIKIRVIDHNDSATFVLFDRDASELFKKSCVEMLDSDGMGNDASNIPQEIADMVGKSYLFKVESNINFVAMYEKSYRVKKVASDPVLVGKFKTKYDDLMKNGREDDVGLDDGVANQGEDNVALVCVLKILVIS* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3249 446 CDD RPA1_DBD_C 264 400 IPR013955 -
Mal4g3249 446 SUPERFAMILY Nucleic acid-binding proteins 111 216 IPR012340 -
Mal4g3249 446 CDD RPA1_DBD_B_like 120 207 - -
Mal4g3249 446 Pfam Replication factor-A C terminal domain 263 380 IPR013955 -
Mal4g3249 446 Pfam Domain of unknown function DUF223 23 118 IPR003871 -
Mal4g3249 446 CDD RPA1_DBD_A_like 2 87 - -
Mal4g3249 446 SUPERFAMILY Nucleic acid-binding proteins 261 382 IPR012340 -
Mal4g3249 446 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 2 347 - -
Mal4g3249 446 Gene3D - 1 92 IPR012340 -
Mal4g3249 446 PANTHER REPLICATION FACTOR A 1, RFA1 2 347 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal4g3249 446 Gene3D - 95 225 IPR012340 -
Mal4g3249 446 SUPERFAMILY Nucleic acid-binding proteins 2 91 IPR012340 -
Mal4g3249 446 Gene3D - 240 399 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3249 Mal-Chr4 94702356 94705542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3249 26 346 Core DNA Replication Machinery Family AT4G19130 21.345 1.21e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3249 - - mtr:MTR_2g048560 680.248