Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3214 ATGGCCACTTTAACCAAATTTATTATTCTCCTTCATCTTATATCATTATGTTTAATTCTACCAACTTTAGCTAAAAATTCAGATTCAAAAAATGATTATAACAACGACATACTAGATAATATTCCAACTTCAAGCTACGACAACAACATTCCCAATAGTAACACTCCACAAAATGTTGTTGTCATGAACACAATTGACTCATGCTGGAGAACGAATTCAAATTGGGCTTCAAATCGTCAATCATTAGCAGATTGTGCAATTGGATTTGGCAAAGATGCAATTGGAGGAAAATATGGTGAAATATATGAAGTAACTGATCCTTCAGATGACCCAATAAATCCAAAACAAGGTACACTACGCTATGGTGTAATCCAAACAGAACCACTTTGGATAACATTTGCAAATGACATGGTTATTAAATTGAAAAATGAACTTATTGTAAATAGTTACAAAACAATTGATGGTAGAGGTGTTAAGGTTGAAATTGGAAATGGACCATGTATTACAATACAAGGTGTTAGTCATGTGATTGTGCATGGAATTAGTATTCATGATTGTAAACCAAGTGTGCCTGGTATGGTTAGGAGTAGCGTTGATCATGTTGGATATCGTCAAGGTTGTGATGGTGATGGTATTAGTGTTTTTGCTTCTTCTAATATTTGGATTGATCATTGCTTTTTGGCAAGATGTACTGATGGACTTACTGATGTTACTCATGCCTCAACTGGTGTCACTATCTCAAATAATTACTTCACTCAACATGACAAAGTGATGCTACTAGGACACAACGATGATTACAGTGCTGATAGAGTGATGAAAGTAACAGTAGCTTTCAACCGTTTTGCCAGTGGCCTAATAGAAAGAATGCCAAGGGTAAGATTTGGTTATGCCCATGTTGTAAACAACCGATATGATGAGTGGCTCATGTATGCCATTGGTGGTAGTGCTGACCCTACCATTTTCAGTCAAGCAAACTACTTTATAGCTTCAAAAAATTCTAATGCAAAACAGGTTACCAAGAGGGAAACTGATGGAAAATGGAAAAATTGGAAATGGAGGACTTATGGGGATGAATTCTTAAATGGTGCATATTTTGTGCCATCTGGATATGGAAGTTGTACCCCGTTATATTCACAATCTCAAAACTTTGTTGCTGCTAAGGCATCCGTGGTGCCTTTATTAACACTCAATGCAGGACCTCTTGATTGTGTTGCTAATAAAGCATGTTAA 1230 0.361 MATLTKFIILLHLISLCLILPTLAKNSDSKNDYNNDILDNIPTSSYDNNIPNSNTPQNVVVMNTIDSCWRTNSNWASNRQSLADCAIGFGKDAIGGKYGEIYEVTDPSDDPINPKQGTLRYGVIQTEPLWITFANDMVIKLKNELIVNSYKTIDGRGVKVEIGNGPCITIQGVSHVIVHGISIHDCKPSVPGMVRSSVDHVGYRQGCDGDGISVFASSNIWIDHCFLARCTDGLTDVTHASTGVTISNNYFTQHDKVMLLGHNDDYSADRVMKVTVAFNRFASGLIERMPRVRFGYAHVVNNRYDEWLMYAIGGSADPTIFSQANYFIASKNSNAKQVTKRETDGKWKNWKWRTYGDEFLNGAYFVPSGYGSCTPLYSQSQNFVAAKASVVPLLTLNAGPLDCVANKAC* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3214 409 SUPERFAMILY Pectin lyase-like 83 407 IPR011050 -
Mal4g3214 409 Gene3D - 62 402 IPR012334 -
Mal4g3214 409 PANTHER PECTATE LYASE 16-RELATED 49 408 - -
Mal4g3214 409 SMART amb_all 136 333 IPR002022 -
Mal4g3214 409 PRINTS Pollen allergen Amb family signature 108 133 IPR018082 -
Mal4g3214 409 PRINTS Pollen allergen Amb family signature 380 403 IPR018082 -
Mal4g3214 409 PRINTS Pollen allergen Amb family signature 208 229 IPR018082 -
Mal4g3214 409 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Mal4g3214 409 PRINTS Pollen allergen Amb family signature 144 160 IPR018082 -
Mal4g3214 409 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Mal4g3214 409 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Mal4g3214 409 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Mal4g3214 409 PANTHER PECTATE LYASE 18-RELATED 49 408 IPR045032 GO:0030570
Mal4g3214 409 Pfam Pectate lyase 142 327 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3214 Mal-Chr4 93971606 93973339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3214 60 409 Polysaccharide Lyase AT1G11920 70.085 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3214 K01728 - gmx:100803229 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g3214 4 93971606 93973339 Mal4g3214 4 93971606 93973339 ECH