Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3200 ATGCATGGTGGTGATCCTTTGTCAGTAACTTCTGCTACAAGCAATAATGAAGGTCATGTTAAGATATTTACCAAATGGAATGCTAAAAGTGACGGAAGTGTTGAATGTGCTCCAAAAGAACTAGGTGGTTGTGGTGGCTGTGTGATGGAGCTGAAATGCATGCTACCAAGTGGGAGAATATCTCAACTGGTAACAAAAGCTACCAGTATGATGAAACATTTTTGCAACGCTAAAGAACAAATGAATGTTGAGAATGAAGCAATGTCAAGTTGCAAGAATGACAGTGACATATATTGTCCGGTGTCAAGTGAGCTTATAAAAGAAGGGCTATTTGAATTCCAAAAGCATTGGAGGAACGGTGAACCCATCATAGTACGTGATGTTCTCAAACAAGGGACAGGATTGAGCTGGGCGCCAATGGTTACTTGGAGAGAATTGTGTGGAAAGTTAGCTTCTAGCTCAAACGCTAAGTCAGAAGTAAAGGCCATTGACTGCTTGTCTAGTTGCGAGGTAGTAATTAACACTCGCGAGTTCTTCGAAGGTTATAGGGAGGGAAGAAGATATAGAAATTTCTGGCCAGCGATGCTCAAGCTAAAAGATTGGCCCCCTTTTGACAAGTTTGAAGATCTTTTGCCTCGCCATTACGACGAGTTTATCCGTTGCTTGCCATTTCAAGAGTATAGTGATCCTCGATCCGGAATACTCAACCTTGCCACAAAGTTGCCACCACATGTCATAAAGCCTGACTTAGGTCCAAAAACTTACATTGCTTATGGAATCAAAGAAGAGCTTGGCAGAGGAGATTCTGTTACAAAACTTCATTGTGATATGGCAGACGCGGTGAATATTTTGACTCATATACATGAGGTGAAATTAACTGATGAACAAATTTATGCTGTTAGAAAAATAAAAAGAGCACATAAGTCTCAAGATAAGAAAGAGGGTCGTGCTCTAGATAATAAAGGCCCTTTTGAAATTAATGGAAAGTTCTTTTCAAATAAAGGGCCATCTATCACAAAAGAAACATCGGAAACAGTTGGTGCTCTTTGGGACATATTTAGAAGAGAAGATACTGCAAAGTTAGAAGCATATCTTAGAAAATATTCCAAGGAATTTAGGCATATTTTTTGTTCTCCAGTAAAACAGGTTGACCATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCATAAGAAGAAGCTAAAGGAAGAGTTTGGTGTAGAACCTTGGACTTTTGAGCAAAAACTTGGTGAAGCAATATTTATACCTGCTGGATGCCCTCACCAAGTTAGAAATCTCAAGTCGTGCACAAAAGTTGCTGCAGACTTTGTGTCACCAGAAAATGTGCATTACTGCATGCTTTTAACTAATGAGTTTCGTCTCCTTCCTAAGGGTCACAAGGCAAGAGAAGATAAACTTGAGTTAAAGAAGATGATAATCTATGCTGTTGATCAAGCTGTTCAAGAATTGGAAGCTTTCAATGAAGGCTCTTCACTGGCTTGA 1506 0.3938 MHGGDPLSVTSATSNNEGHVKIFTKWNAKSDGSVECAPKELGGCGGCVMELKCMLPSGRISQLVTKATSMMKHFCNAKEQMNVENEAMSSCKNDSDIYCPVSSELIKEGLFEFQKHWRNGEPIIVRDVLKQGTGLSWAPMVTWRELCGKLASSSNAKSEVKAIDCLSSCEVVINTREFFEGYREGRRYRNFWPAMLKLKDWPPFDKFEDLLPRHYDEFIRCLPFQEYSDPRSGILNLATKLPPHVIKPDLGPKTYIAYGIKEELGRGDSVTKLHCDMADAVNILTHIHEVKLTDEQIYAVRKIKRAHKSQDKKEGRALDNKGPFEINGKFFSNKGPSITKETSETVGALWDIFRREDTAKLEAYLRKYSKEFRHIFCSPVKQVDHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAIFIPAGCPHQVRNLKSCTKVAADFVSPENVHYCMLLTNEFRLLPKGHKAREDKLELKKMIIYAVDQAVQELEAFNEGSSLA* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3200 501 Pfam JmjC domain, hydroxylase 341 444 IPR003347 -
Mal4g3200 501 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 494 IPR045109 GO:0032454|GO:0033169
Mal4g3200 501 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN PROTEIN 1 494 - -
Mal4g3200 501 CDD cupin_RmlC-like 385 433 - -
Mal4g3200 501 SMART cupin_9 211 461 IPR003347 -
Mal4g3200 501 SUPERFAMILY Clavaminate synthase-like 111 492 - -
Mal4g3200 501 ProSiteProfiles JmjC domain profile. 230 461 IPR003347 -
Mal4g3200 501 Gene3D Cupin 94 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3200 Mal-Chr4 93796501 93799731 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mal4g3200 JmjC 8.6e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3200 K15601 K21989 gmx:100801772 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5521 5 129837416 129842049 Mal4g3200 4 93796501 93799731 PCT