Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3190 ATGCCTTTAGTCACTTCATCATCTCATCATCATGCTCATCATCCAATAATAAATTCCAATAACAACAATTCTAATGCAAACAACACAAGTTGTCTCTTCCTTCCTATTCCTAATTCCACTAATAATATTAACAATAATCACTTCATCACCAACTCTAATAACACCATGCTTCAAAATAACACCAACAACACTCCTGGTTTAGGTTACTATTTCATGGACAACAACAACAACAACAATGGAAGTTCTTCTTCTTCTTCCTCTTCTGTTAAAGCTAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGAAGCTTACATCAATTGTCAAAAGGTTGGAGCACCAAGTGAAGTGGTGGCTAGGTTAGAAGAAGCATGTGCAACTGCAGTGAGAATGGGTGGAGATACAGTTGGATCAGGTTGCATAGGTGAAGATCCAGCTTTGGATCAGTTCATGGAAGCTTATTGTGAGATGCTTATCAAGTATGAGCAAGAACTCTCTAAACCCTTGAAAGAAGCCATGCTTTTTCTTCAAAGGATTGAAGTCCAGTTCAAAAATCTTACAGTTTCTTCTTCAGATAATATTGCTTGTAATGAAAGTGGAGATAGGAATGGATCATCTGAAGAAGATCAAGTTGATCTATACAACAATATGATAGATCCTCAGGCAGAAGACAGGGAATTAAAGGGTCAGCTTTTGAGAAAGTACAGTGGATATTTGGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAAAAGGGAAAACTACCAAAAGAAGCTAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCCTCTGAATCACAGAAGCTGGCACTAGCAGAGTCAACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAAAGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTAATGGATCCAAACCATCCACATTATTACATGGATAATGTTCTCACCAATTCATTTCCCATGGATCTATCTAACACCATGCTCTAG 1038 0.3863 MPLVTSSSHHHAHHPIINSNNNNSNANNTSCLFLPIPNSTNNINNNHFITNSNNTMLQNNTNNTPGLGYYFMDNNNNNNGSSSSSSSSVKAKIMAHPHYHRLLEAYINCQKVGAPSEVVARLEEACATAVRMGGDTVGSGCIGEDPALDQFMEAYCEMLIKYEQELSKPLKEAMLFLQRIEVQFKNLTVSSSDNIACNESGDRNGSSEEDQVDLYNNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPNHPHYYMDNVLTNSFPMDLSNTML* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3190 345 ProSitePatterns 'Homeobox' domain signature. 285 308 IPR017970 GO:0000981|GO:0006355
Mal4g3190 345 SMART ELK_2 227 248 IPR005539 GO:0003677
Mal4g3190 345 CDD homeodomain 259 311 IPR001356 GO:0003677
Mal4g3190 345 Pfam KNOX2 domain 141 188 IPR005541 GO:0003677|GO:0005634
Mal4g3190 345 Gene3D - 252 314 - -
Mal4g3190 345 ProSiteProfiles 'Homeobox' domain profile. 247 310 IPR001356 GO:0003677
Mal4g3190 345 Pfam ELK domain 227 248 IPR005539 GO:0003677
Mal4g3190 345 SMART KNOX2_2 138 189 IPR005541 GO:0003677|GO:0005634
Mal4g3190 345 SMART HOX_1 249 314 IPR001356 GO:0003677
Mal4g3190 345 SMART KNOX1_2 87 131 IPR005540 GO:0003677|GO:0005634
Mal4g3190 345 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 20 334 - -
Mal4g3190 345 Pfam Homeobox KN domain 267 306 IPR008422 GO:0003677|GO:0006355
Mal4g3190 345 ProSiteProfiles ELK domain profile. 227 247 IPR005539 GO:0003677
Mal4g3190 345 Pfam KNOX1 domain 89 127 IPR005540 GO:0003677|GO:0005634
Mal4g3190 345 SUPERFAMILY Homeodomain-like 249 324 IPR009057 -
Mal4g3190 345 MobiDBLite consensus disorder prediction 1 22 - -
Mal4g3190 345 PANTHER - 20 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3190 Mal-Chr4 93608437 93615745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3190 89 345 Homeobox Transcription Factor Family AT1G62360 78.707 1.14e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mal4g3190 KNOX2 2.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3190 - - gmx:100805837 484.567