Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3187 ATGTCTCCACCGCAACCCAGCCGTGTAGAACCAAAAATCTGGCAGTGCTGCGCCGGCTCCACCGTCAAAATTCCTAAACTTCATTCCAAAGTTTACTACTTTCCATTAGGGCACTTTGAACACGCCTGCCCTAATCCCCCCAACACCGAAACACTCTCCCTTCTCCATCATCACCGTCCATTCACTCCATGCATCATATCCGCCGTTGATCTCCTCGCGAATCCTCATACCGACGAAGTCTTCGTCAAACTACTCCTTACTCCCGTCACTGATGACGGCCTTCACGTTCACGAAGAGGTTCGTGAACGTGAAGATAAAGATGATGGCTATGAGGTTGTTTCCTCTAGCAAGATTCTTTCCCAATCTGATGCTAATAACGGCGGTGCATTCTCCGTACCTCGTGAATGCGCGAAATCAATCTTCCCACCACTTGACCTCAAAACCCTAATGCCATCTCAAGAACTCTCTGTCACCGATATTCACGGCAAAGTCTGGGAGTTTCGCCACGTCTACCGTGGAACTCCGCTGAGACACCTCATCACCTCTAACTGGAGTAAGTTCGTCGACAAGAAGAAACTCGTCTGCGGCGATTCTTTAATTTTTATGAAAAACTCAGCTGGAAGTATCTTTGTTGGAATCCGCCGGCATAAGAAGTTTGGTACGGCGGCTAAGATAACGGAAAAATCGGTTATGGAGGCAGCGGAATTAGCGGATAAGAACATGGCTTTTGAAGTTGTGTATTATCCGACGGTTGAAGGTTGTTGTAATTTTGTGGTGGATGCTAAGGTTGTTGAGGATGCTATGAAGATTAATTGGAACTGTGGAATGAGAATTAAACTTTCTTTGAAGAATGATGATTCTTCAAAGAGATGCTCAATTTTTCAGGGGACAATATCTGCTGTCTCTGCTCCTAATCGTCCATGGCGCATGCTTGAGGTTAACTGGGATAGACATGAAATTTTGCAGAATCCAAAGCAAAGTCCTTGGGAGGTTAAACTTATTTCCGAAATGCCTGAATTGTATCTTCAGTTGCCCCCAACAAAAAAACTTAGAGTTGCTCAGGGTTTTGCACTATCAACTGATATGATAGAGTTCCATGAATCAGCAATGAGATCCTTCAACCAAACATTGCTGAATTGTCCTACTTTTATTGATGGCATTCAGAGAGCCGGGCACAATCTTTTTTGCACAGCAACTTCTTCCAACTTTTTGAATGATAAGGGTAATGGTTTCATTCAGAACAATTCAATGGCAAAGTTGGAACATGCATCAACTAAGCTAAACATTAGCAATCCTATATCTGGCGACTTGTCATCTCATAACCATAGTATTTTGAACTCTTTCAAGACAAAGATTGAAGATACCCACAACTGCAACACCAAAGAAGTTACTCCTAATTCATTTGTGCTATTTGGTAAGACCATATATCTTGATGGAAGTGATTTGCATGATTCTGATGCCAAGGGAGAGGATAGTTGCAAGGGCAACAATGAAATTGAAGGCGATCACAAAACTTGCACATAA 1524 0.4304 MSPPQPSRVEPKIWQCCAGSTVKIPKLHSKVYYFPLGHFEHACPNPPNTETLSLLHHHRPFTPCIISAVDLLANPHTDEVFVKLLLTPVTDDGLHVHEEVREREDKDDGYEVVSSSKILSQSDANNGGAFSVPRECAKSIFPPLDLKTLMPSQELSVTDIHGKVWEFRHVYRGTPLRHLITSNWSKFVDKKKLVCGDSLIFMKNSAGSIFVGIRRHKKFGTAAKITEKSVMEAAELADKNMAFEVVYYPTVEGCCNFVVDAKVVEDAMKINWNCGMRIKLSLKNDDSSKRCSIFQGTISAVSAPNRPWRMLEVNWDRHEILQNPKQSPWEVKLISEMPELYLQLPPTKKLRVAQGFALSTDMIEFHESAMRSFNQTLLNCPTFIDGIQRAGHNLFCTATSSNFLNDKGNGFIQNNSMAKLEHASTKLNISNPISGDLSSHNHSILNSFKTKIEDTHNCNTKEVTPNSFVLFGKTIYLDGSDLHDSDAKGEDSCKGNNEIEGDHKTCT* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3187 507 SMART B3_2 115 217 IPR003340 GO:0003677
Mal4g3187 507 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
Mal4g3187 507 SUPERFAMILY DNA-binding pseudobarrel domain 116 217 IPR015300 -
Mal4g3187 507 Pfam B3 DNA binding domain 117 216 IPR003340 GO:0003677
Mal4g3187 507 PANTHER AUXIN RESPONSE FACTOR 5 222 - -
Mal4g3187 507 PANTHER AUXIN RESPONSE FACTOR 224 499 - -
Mal4g3187 507 Pfam Auxin response factor 233 311 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mal4g3187 507 Gene3D - 272 339 - -
Mal4g3187 507 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 222 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal4g3187 507 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 224 499 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal4g3187 507 CDD B3_DNA 117 215 IPR003340 GO:0003677
Mal4g3187 507 Gene3D - 114 217 IPR015300 -
Mal4g3187 507 MobiDBLite consensus disorder prediction 484 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3187 Mal-Chr4 93557547 93559822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3187 1 478 B3 DNA Binding Superfamily AT1G77850 37.316 6.27e-109 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal4g3187 B3 1.5e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3187 - - mtr:MTR_5g040880 605.52