Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3182 ATGAGTCAACTCGGTTTGTTATTGCAAGAACCGGTTCAGACTCAGAGTGAATCAAGAACGATTCTCGGTTTATTAAGGGAACAAATGGATGGTGTCGATGGTGTGCCACGTCGGAGACGGAGTTTCAAGGAACGGTTGGGATTTATTGGTTGTTGTGGGGCCAATTGGGTGTTCCGTTCTTCTTCAGAACAATCGCAACAAATTCCAGATACTGATACGGAATCGGGTCAAGATCCGAATATGTGTATGAATCCGAATCCGACTCCAAATCCAATTATTCCGACGGGTTCGAGTTCGTCGAGTATGAATCTTGCGGCGGCGTTGGCGGCGGAGAGGCAACTACGGGGACCGGCGGCAGAAACGAGTGGTGGAGGGGAGAGGATGCCGGGGACGCCGTGGAGAGTGTCGTTGATGCGGTTGTTGGAGGAAACGGAAAATGGTGATACGGTGGCGGTTAAGGCGGAGGAGAAAGTTGGTGGTGTGGCGGGAAATGATTCGGTGTGTTGCGTGTGCATGGGGAGGAATAAAGGTGCGGCGTTTATTCCGTGTGGACACACTTTTTGCAGAGTTTGTTCTAGGGAGCTGTGGTTGAATAGAGGCTCTTGTCCCCTTTGTAATCGTTCTATTGTTGAGATTCTTGACATTTTTTAG 651 0.4977 MSQLGLLLQEPVQTQSESRTILGLLREQMDGVDGVPRRRRSFKERLGFIGCCGANWVFRSSSEQSQQIPDTDTESGQDPNMCMNPNPTPNPIIPTGSSSSSMNLAAALAAERQLRGPAAETSGGGERMPGTPWRVSLMRLLEETENGDTVAVKAEEKVGGVAGNDSVCCVCMGRNKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSIVEILDIF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3182 216 CDD RING-HC 168 205 - -
Mal4g3182 216 SUPERFAMILY RING/U-box 163 213 - -
Mal4g3182 216 SMART ring_2 168 205 IPR001841 -
Mal4g3182 216 PANTHER OS01G0917900 PROTEIN 18 216 - -
Mal4g3182 216 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 216 - -
Mal4g3182 216 Pfam Zinc finger, C3HC4 type (RING finger) 165 210 - -
Mal4g3182 216 ProSiteProfiles Zinc finger RING-type profile. 168 206 IPR001841 -
Mal4g3182 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 215 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3182 Mal-Chr4 93422050 93422700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3182 21 216 C3H Transcription Factor Family AT4G22250 50.980 1.38e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3182 - - gmx:100804959 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5532 5 129945920 129946585 Mal4g3182 4 93422050 93422700 PCT