Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3148 ATGTCACCAACCACCAAAATTCTCACGGCCGACCACCGCAACAGCCACTTCCCGAAACTCACATCCTCGTCTTCGAAAATGAAAATGGTCACCAAAACGAAATCATCGCGGTTACAATTCTTCGTTCGCATGATGTGGAAGTGTGACACCATAGTGATTCGTGCTTCAAGAGAAGACACAGTGAAATCACTTCTCCAACAAATTTCATCTAAAACCAAAATTCCTATTGAATATCAACGATTAATCTACAAAGGAAAACAACTTCAGAAAAACCAGAGTCTCGGTGAATGCGGCGTCGAAAACGACGCAAATCTTCAATTGGTTGCATATTTGCAGAGTATAGCGTGTCATAAGGTGTGGAAAGACACACAAAATATTGTTTCGTTGATTCTCAGGCTCTGTAAAGGTGAATTGGGAATCGATGGTTCAAAAATTATTCATGATCATTTTGCAAAGTATATGATTGATTCTGAATATTTTTCTGTTTTCATGTTTATGAAAATTCCTTTATTGTTGGTAGCTCTTTATATGTCCCCTGCAAGTAATAATGCGGGCATTGCTGATTTATGTGTTAAAAGTTTCACGGAAATTTGGTGTTTGGAGTTTTGTGAATTGCTTAGAGGGGTAGGGTGTAAGGGTGATGATCCTTTGTATGTTTTTTGCCGGAATGGTTTTGCATCTCTGTTGGTGCTTGTTGGTGGTATTAGCGTTAAGAATCCTAAACGGAATGTTTTGCTTCAGGGTATTTTTGCTTTTGTTCATGAGCTTGCAGATGGATTGTTGATGTATTTGGATTCGAGTAAGAATTGTGCCACTAGCGAGGGGGTTTCGTGCAGCCAGGTTGTTAGGGATTTTTTGAAGTTTTCTAAACCTTTGAGGATGGGAATCGTGGAGGAGCAAGCAGTATTTGATGAAACATGGAGGATTGCAAAATTAGTTGATCAATTTAGTATTGTATTTATCCAGTTATTGAACAAAATGGATGAGTGCCTTCAAGTCATGGAGGATTGCTTGGTTAACAAGAAACATGGAGAAGGTGATGGGTCCGTTATCCATAATGGGTGGTCTCATTATCTTATCATCCTGGAGGAATTGTGTCACATCTCTAAGCTCTATGACAACGCAAAAGAGATATTTTGGGAAGTTTTGTCGCGTCGAAAAAATATGCTATCTCATTTGATTGTTCGGTACTTGGAGAAAACTGATGATCATCGGTGGGTTCTCGAGAACAGAAGTGTGACCGATTTTGAATCCAGGAGGCATTTGGCGTTGATGCTATTCCCTGACTTAAATCAAGAATCATTGGGATATGAGATGCTTATTGACAGGTCTCAGGTTTTGGCTGAATCTCTCGAGTACATATCACAAGCTAAGCCTAAATATCTGGAGGGCGGACTATTTATGGAATTCAAGAATGAGGAGGGTACAGGACCGGGTGTAATAAGGGAATGGTTAGTTTTGGTGTGTCAGGAAATATTTAATCCGGAACGTGCCCTTTTTGTGGCATGTCCAAATGACCGCAGGAGATTTTTTCCTAATGCTGCATCTAAGGTAAATCCTCTGCACCTAAAGTACTTCAGCTTCTGTGGACGTATGATTGCATTATCTTTGAAGAATAAGGTGCATGTGGGTATTGTTTTTGATCGTGTGTTTTTCAAGCAATTGGCTGGAAACTATATTACTTTAGAAGATATTCGGGATGCAGATCCTGTAATGTATCGTAGCTGCAAGCAAATATTGGAGATGGATGCTGATTATATTGATTCAGATGCATTAGGACTGACATTTTCTATAGAGGTGGAGGAATTAGGGCACAGGAAAGTGATTGAGTTCTTCCCTGGTGGGGAAAGCCTTGTCGTGGATAGTAAGAATAGGAAGAATTATGTTGATCATCTTATACATAATCGTTTTGTGACATCCATATCTGAGCAGGTATTACATTTTGCCGAGGGTTTTGCTGATATTATATCTGGCTCAAGGCTAGAGTTCTTTCAAATTTTAGACCTTGAAGATCTTGATTGGATGCTGCACGGGAGTGAAAATGCCATTTCTGTTGAAGATTGGAAGGCACATACCAAGTATCAGGGCTATAAAAAGAATGATTGTCAGATATCTTGGTTTTGGAAGATCGTTGGAAGAATGTCAGCAGAGCAAAGGAAGGTTCTTCTGTTCTTTTGGACATCTGTGAAACATTTACCAGTTGAAGGTTTCCATGGTTTGAATTCCCGTCTATTCATTTGCAAATCCCACGAACCTCATAATCACTTGCCCTCATCTCACACTTGTTTCTATGAGCTGTGCTTTCCCCCGTATTCTTCTATGGCTATCATGCAAGATCGCCTTGGAATCATCACTCAAGAACACATCGGCTGCAGTTTCGGTACTCCATAA 2391 0.3998 MSPTTKILTADHRNSHFPKLTSSSSKMKMVTKTKSSRLQFFVRMMWKCDTIVIRASREDTVKSLLQQISSKTKIPIEYQRLIYKGKQLQKNQSLGECGVENDANLQLVAYLQSIACHKVWKDTQNIVSLILRLCKGELGIDGSKIIHDHFAKYMIDSEYFSVFMFMKIPLLLVALYMSPASNNAGIADLCVKSFTEIWCLEFCELLRGVGCKGDDPLYVFCRNGFASLLVLVGGISVKNPKRNVLLQGIFAFVHELADGLLMYLDSSKNCATSEGVSCSQVVRDFLKFSKPLRMGIVEEQAVFDETWRIAKLVDQFSIVFIQLLNKMDECLQVMEDCLVNKKHGEGDGSVIHNGWSHYLIILEELCHISKLYDNAKEIFWEVLSRRKNMLSHLIVRYLEKTDDHRWVLENRSVTDFESRRHLALMLFPDLNQESLGYEMLIDRSQVLAESLEYISQAKPKYLEGGLFMEFKNEEGTGPGVIREWLVLVCQEIFNPERALFVACPNDRRRFFPNAASKVNPLHLKYFSFCGRMIALSLKNKVHVGIVFDRVFFKQLAGNYITLEDIRDADPVMYRSCKQILEMDADYIDSDALGLTFSIEVEELGHRKVIEFFPGGESLVVDSKNRKNYVDHLIHNRFVTSISEQVLHFAEGFADIISGSRLEFFQILDLEDLDWMLHGSENAISVEDWKAHTKYQGYKKNDCQISWFWKIVGRMSAEQRKVLLFFWTSVKHLPVEGFHGLNSRLFICKSHEPHNHLPSSHTCFYELCFPPYSSMAIMQDRLGIITQEHIGCSFGTP* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3148 796 Pfam Ubiquitin family 41 108 IPR000626 GO:0005515
Mal4g3148 796 Gene3D Hect, E3 ligase catalytic domain 558 640 - -
Mal4g3148 796 SUPERFAMILY Ubiquitin-like 18 109 IPR029071 -
Mal4g3148 796 SUPERFAMILY Hect, E3 ligase catalytic domain 437 781 IPR035983 GO:0004842
Mal4g3148 796 Pfam HECT-domain (ubiquitin-transferase) 487 788 IPR000569 GO:0004842
Mal4g3148 796 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 24 793 - -
Mal4g3148 796 PRINTS Ubiquitin signature 70 90 IPR019956 -
Mal4g3148 796 PRINTS Ubiquitin signature 49 69 IPR019956 -
Mal4g3148 796 PRINTS Ubiquitin signature 91 112 IPR019956 -
Mal4g3148 796 Gene3D Hect, E3 ligase catalytic domains 440 670 - -
Mal4g3148 796 CDD HECTc 438 794 IPR000569 GO:0004842
Mal4g3148 796 ProSiteProfiles Ubiquitin domain profile. 38 108 IPR000626 GO:0005515
Mal4g3148 796 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 24 793 - -
Mal4g3148 796 SMART hect_3 456 794 IPR000569 GO:0004842
Mal4g3148 796 Gene3D - 29 128 - -
Mal4g3148 796 Gene3D Hect, E3 ligase catalytic domain 680 794 - -
Mal4g3148 796 ProSiteProfiles HECT domain profile. 458 796 IPR000569 GO:0004842
Mal4g3148 796 SMART ubq_7 38 112 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3148 Mal-Chr4 92792395 92796526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3148 38 112 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.000 2.10e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3148 - - mtr:MTR_2g025790 1124