Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3121 ATGGACCCGGGGAAGCTATTCATTGGAGGGATTTCCTGGGATACAAATGAAGACCGACTCAGACAGTATTTCCAGAACTTCGGAGATGTAGTTGAAGCTGTGATTATGAAGGATCGTACCACGGGACGTGCTCGTGGTTTTGGATTTGTTGTTTTTGCTGACCCTTCTGTTGCCGAACGAGTTGTTATGGAAAAACATGTCATAGATGGTAGAACTGTTGAAGCAAAAAAAGCTGTCCCTAGAGATGATCAGAATGTGTTTAGCAGAAGCAACAGCAGCAACCATGGGTCGCCTAGTCCTACTCCTATACGCACAAAGAAGATATTTGTCGGAGGATTAGCATCCACAGTTACTGAGAGTGATTTTAAGAATTACTTTGATCAATTTGGAACAATTACTGATGTTGTTGTGATGTATGACCATAACACTCAACGGCCTAGAGGTTTTGGATTCATCACATATGATTCTGAGGAAGCAGTTGAAAAAGTTTTGCACAAAACTTTTCATGAACTTAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTCCCGAAGGAATTATCTCCAGGTCCAAGTAGAGGCCAACTAAGTGGTTTTAGTTACGGTACTATGAGTAGAGTTAGTAGTTTTTCTAATGGTTTCACTCAGGGATATAGTCCAAGCCTTATTGGAGGACATGGACTTAGATTAGACGGTAGATTGAGTCCTGCTAATGTTGGCCGTAGTGGATATACTCTTTTCAGTCCAAGTTATGGGTCAGGACTCAACTTTGAGTCACCATTGAGCCAAATTGAAAATGAAAGCTTTACATCTAACTTTGTCATGGGACGTGCACTGAGCGCTCCATACAGTGCAAGTCCGAGCAGGTACAATAATGCCATGGGGTATGCTGCTAGTTCAAATGTTGGCAACAATTCAGCCATAAGTTCAACAAATCAGAGTTTGTGGGGTAATGGGAATCTTAGCTATGCTAATAACCCTGCAAGCTCCGATGCTTTCGTAGGTTACGGAAGTCAGAATTCAAGTTTGGGTTCTTTTGGTAATATCGGTTCACTTTGGGGTACCTCTGTTGGTACTACTAATCAAGCTGGAACTATTGGCTCTGGTTATGGTAAAAACAGTCTTCATTATAGGCTTGGAGATGTGATTTTAGGGTCAAAAGCGGTAGGATATGGAAAAAGCAGTGACAGCGTTGTTGAATCAGATTCATCGTACGCTTTCTCAAATGGCAATTATGGTGAGGCATACAAAAATACTTTTGAAGCTGGGCCATTTTATCAAGACCATACTTGGAGATCAACAACTTCAGAACTAGAGGATTCTGGTCCTCTTAGTTTTGGCCTTGAAAATGCTGTTTCCGATTTGATGCGCAAAAGCTCTAGTGGTGGTCACATTGGGGCTTATGCTGTTGCTGCTAATAGACAATCAAACAGAGGAATTGCTGCCTAG 1446 0.4184 MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVFSRSNSSNHGSPSPTPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKELSPGPSRGQLSGFSYGTMSRVSSFSNGFTQGYSPSLIGGHGLRLDGRLSPANVGRSGYTLFSPSYGSGLNFESPLSQIENESFTSNFVMGRALSAPYSASPSRYNNAMGYAASSNVGNNSAISSTNQSLWGNGNLSYANNPASSDAFVGYGSQNSSLGSFGNIGSLWGTSVGTTNQAGTIGSGYGKNSLHYRLGDVILGSKAVGYGKSSDSVVESDSSYAFSNGNYGEAYKNTFEAGPFYQDHTWRSTTSELEDSGPLSFGLENAVSDLMRKSSSGGHIGAYAVAANRQSNRGIAA* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3121 481 Gene3D - 3 86 IPR012677 -
Mal4g3121 481 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 481 - -
Mal4g3121 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Mal4g3121 481 SUPERFAMILY RNA-binding domain, RBD 3 97 IPR035979 GO:0003676
Mal4g3121 481 SMART rrm1_1 5 76 IPR000504 GO:0003723
Mal4g3121 481 SMART rrm1_1 107 179 IPR000504 GO:0003723
Mal4g3121 481 CDD RRM1_hnRNPA_hnRNPD_like 6 76 - -
Mal4g3121 481 SUPERFAMILY RNA-binding domain, RBD 97 207 IPR035979 GO:0003676
Mal4g3121 481 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Mal4g3121 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Mal4g3121 481 MobiDBLite consensus disorder prediction 79 103 - -
Mal4g3121 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 72 IPR000504 GO:0003723
Mal4g3121 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Mal4g3121 481 Gene3D - 103 189 IPR012677 -
Mal4g3121 481 MobiDBLite consensus disorder prediction 84 101 - -
Mal4g3121 481 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3121 Mal-Chr4 92510290 92512659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3121 6 185 Eukaryotic Initiation Factors Gene Family AT2G36660 29.255 1.63e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3121 K14411 - pvy:116115801 595.504