Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3091 ATGGCTGAATCAGACAACGAGTCAGGAGGAGGTTGCAGAGAGCAAGACAGGTTTCTTCCAATAGCAAACGTGAGCAGGATCATGAAAAAGGCTTTACCAGCAAACGCAAAGATCTCAAAAGAAGCAAAAGAAACAGTACAAGAGTGTGTATCAGAGTTCATTAGTTTCATAACAGGTGAAGCTTCTGATAAGTGTCAGAAAGAGAAGAGGAAAACAATCAACGGTGATGATCTTCTTTGGGCTATGACTACACTTGGATTTGAAGATTATGTTGAGCCACTCAAGATTTATTTGAGTAAGTATAGGGAGATGGAAGGGGAGAAGACTATGATTGGTAGTAGAAGTGATCAAAGAGATCATGGTAGTGGGGTTTATGGTGATGGAGTTTCATCTTCTATGATGATGATGATGGGACATAACATGTATGGATCTGGTAGTGGATCACCATCTTCCCGAAGGAATATCAGATAA 471 0.4034 MAESDNESGGGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKIYLSKYREMEGEKTMIGSRSDQRDHGSGVYGDGVSSSMMMMMGHNMYGSGSGSPSSRRNIR* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3091 156 PRINTS CCAAT-binding transcription factor subunit A signature 46 64 - -
Mal4g3091 156 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Mal4g3091 156 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Mal4g3091 156 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 142 - -
Mal4g3091 156 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 142 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mal4g3091 156 ProSitePatterns NF-YB/HAP3 subunit signature. 49 65 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mal4g3091 156 Gene3D Histone, subunit A 8 124 IPR009072 GO:0046982
Mal4g3091 156 SUPERFAMILY Histone-fold 15 119 IPR009072 GO:0046982
Mal4g3091 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 18 82 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3091 Mal-Chr4 91959371 91959841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3091 1 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.500 5.77e-71 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mal4g3091 CBFD_NFYB_HMF 9.7e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3091 K08065 - gmx:100305641 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5582 5 130491464 130491874 Mal4g3091 4 91959371 91959841 PCT