LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal4g3029	ATGGCTCGTTTCTCCTCCTTGCCGCGCCTCCTTTACTCCACCGCCATTTTCCGTCGCTTCTCCTCCGACTCAGTGCAGCAGGAGAGGATCCGCAACGTTTGGATCTCGGGGCTCGTCGACCCTAACAAGGTCAGAGTGACCGAGAGATACATGTTATACACTGGTGAGCTCCAAAATATGGAGGCAGCTAAGAAACAAATTGAGAAAAATGACAAGTATTATCAATATTCCGTTAAACAAGACGAGAAACACTTCAAATGGTTCATCAATGGTCCCACCTCCGATTCTACTACCGCAGATGTCACTTTCTTCAACTGGAGGAAACACTATAAGATGAGTGTAATTGACACACCTGATCATGTTGATTTCACCGCTGAGGTTGAGAATGCTCTGCGCGCTTTTGATGGTGCAGTTCTTGTTCTTTCTAGTGTTGGTGGGGTGCAGAGCCAGTCCATTACTGTTGATCAGCAAATGATAAAATATCAACTTCCAAGACTAATATTCATCAACAATCTTGACCAGGAGGGAGCAAATCCTTGGGAAGTTGTGAATCAGGCAAGATCCAAGCTTCAGCATCATAGTGCTGCAATCCAAGTTCCAATAGGCTTGGAATATAATTTTAAGGGACTTGTTGATCTTGTGCGATTGAAGGCCTACTTTTTTCTTGATTCAAATGGAGAAAAGGTTTTCATTGAAGAAGTTCCTGCATATATGGAAGCCTTGGTGTCAGAAAAAAGGCGTGAACTTATAAAAACTGTGTCCGAGGTGGACGATAAACTTGCTGAAGCTTTTAGCGGTGACAAGCCCATATCAGCAGCTGATCTTGAGGAAGCAGTTCGTAGGGCCACCATAGCACGGAAATTTATACCATTATTCATGGGCAGTGCTTTCAAATATAAGGGGTTACAACTACTTTTGGATGGTGTACTTAATTATTTGCCGTGTCCAGCTGAAGCTAGTAATTATGCTCTCATCCAATCTAAGAATGAGGAAAAGCATACACTTGTGGCACTGGCTTTCACATCGAAGCGAAAGTATGATAAAATGACATATCTAAGAATCTACGAGGGTGTCATCCGGAGGGGGGATTTTATTACAAACGTGAACACTGGCAAGACGTTCAAGGTTCCTTATTCGATTGAGATGCGAAAAGATGAGATCGGGGTTCCACATCCGCTTCAAATCCGAGAGGATAAGAAGGGGGTTCCTTATGTGGTTGGGTTGCGCAATGAGGTTCCTTATTCGACTGAGCCGCGGAAGGATGATTTGGGGGTTCCTCATATGATTGGGATGACTTGTGATGAGTCGATTCAAGTGGCTCATGCTGGAGAAATAGTAGCTGTACATGATCTCATTAGTGCACCAGGCGATACTTTTACTGATGGATTAGTGAGATATACAAAGGCGTCTATTGATGTTTAA	1422	0.436	MARFSSLPRLLYSTAIFRRFSSDSVQQERIRNVWISGLVDPNKVRVTERYMLYTGELQNMEAAKKQIEKNDKYYQYSVKQDEKHFKWFINGPTSDSTTADVTFFNWRKHYKMSVIDTPDHVDFTAEVENALRAFDGAVLVLSSVGGVQSQSITVDQQMIKYQLPRLIFINNLDQEGANPWEVVNQARSKLQHHSAAIQVPIGLEYNFKGLVDLVRLKAYFFLDSNGEKVFIEEVPAYMEALVSEKRRELIKTVSEVDDKLAEAFSGDKPISAADLEEAVRRATIARKFIPLFMGSAFKYKGLQLLLDGVLNYLPCPAEASNYALIQSKNEEKHTLVALAFTSKRKYDKMTYLRIYEGVIRRGDFITNVNTGKTFKVPYSIEMRKDEIGVPHPLQIREDKKGVPYVVGLRNEVPYSTEPRKDDLGVPHMIGMTCDESIQVAHAGEIVAVHDLISAPGDTFTDGLVRYTKASIDV*	474

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal4g3029	473	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	27	314	IPR027417	-
	Mal4g3029	473	ProSiteProfiles	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	28	318	IPR000795	GO:0003924\|GO:0005525
	Mal4g3029	473	Gene3D	-	21	318	IPR027417	-
	Mal4g3029	473	SUPERFAMILY	Translation proteins	300	384	IPR009000	-
	Mal4g3029	473	Gene3D	Translation factors	319	471	-	-
	Mal4g3029	473	Coils	Coil	50	70	-	-
	Mal4g3029	473	PANTHER	ELONGATION FACTOR G, MITOCHONDRIAL	22	473	IPR045044	-
	Mal4g3029	473	Pfam	Elongation factor Tu GTP binding domain	29	314	IPR000795	GO:0003924\|GO:0005525
	Mal4g3029	473	PANTHER	ELONGATION FACTOR G, MITOCHONDRIAL	22	473	-	-
	Mal4g3029	473	PRINTS	GTP-binding elongation factor signature	32	45	IPR000795	GO:0003924\|GO:0005525
	Mal4g3029	473	PRINTS	GTP-binding elongation factor signature	113	123	IPR000795	GO:0003924\|GO:0005525
	Mal4g3029	473	PRINTS	GTP-binding elongation factor signature	165	174	IPR000795	GO:0003924\|GO:0005525
	Mal4g3029	473	PRINTS	GTP-binding elongation factor signature	129	140	IPR000795	GO:0003924\|GO:0005525

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal4g3029	Mal-Chr4	90714524	90724619	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal4g3029	109	174	Eukaryotic Initiation Factors Gene Family	AT1G56070	37.879	2.51e-08	54.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal4g3029	K02355		-	tcc:18614400	431.409