Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2988 ATGGAGGATCAAGATTTTTTAGGTTATGAACAATTTGTTCATGATGGAAGAGAAGAGGAAGAAGAAGATGAGTTTTGCAGTTGCTGTGAAGATGAAACAGATGAAGAAGAAAGAGAAGAAGAAAAAGATGAAGAAGAATGGAAAGAAACTGAGGAGACAGTGGTGGAAGGATTAAAGGAAGAACTTGATGAATTTTCAGTAAAAATGTTCTTTAAGGGATTATCAATAACTGGAGTTGAGAATTCAACTTCAGGGTTTTCTGGAATTGGAGTGTTTATGGAAAGATCATCAAATCTTCCTCCTATAAGGGTGCAAAAAAGGCTTGATTTTTATGCTGATGAGCCTATGGTTGATTACTTGGCACTCATGGATGGTTTGTTAGAAGCTTTGCAGAACAAGATCCGTAGAGTTTATGCTTTCACAGATTCTGAGTTGTTGTATAAGATAACATTTGAGAAAAATTTGGACACGCCGCTTTTGATGGCATTGAGAGAAAGGATTCTGGAACATGCCAATAATTTTGAAACTTTTGACCTGAAGCTTATACCAAGCATTGATCTTGAGCAGCCAATGCAGTTGGCCACAGTAGCTATGGGACTCGTCACTTTTCCGGTAAATGGCGAAAAATTACTCGAGAATTGTTCAATTTGTTGCGACGACAAGCCAGTGCCAATGATGATTACCTTGAAATGTTCACACACATTCTGTTCACATTGCTTGAGGTCCTATGCTGACGGTAAACTACAATGTTGTCAAGTCCCTATAAGATGTCCTCAACCAGGATGCAGATATTGTATCTCTACACCCGAGTGCAAATCTTTTCTTCCATTCACCTCCTTTGAATCTCTTGAGAAAGCCCTTTCAGAAGCAAATATTGTTCAGTCAGAAAGGTTTTATTGTCCATTTCCGAATTGTTCTGTTCTACTTGATCCTTGCGAGTGTTTATCAGCAATGGATGGTTCATCTAGTCAGTCGGACAATTCTTGTATCGAGTGTCCTGTCTGTCAGAGGTTTATCTGTGTGGACTGTGGCGTTCCTTGGCATTCTTCCATGAGCTGTGAAGAATACCAGAGTTTGCCGGAAGAGGAGAGAGATGCTTCTGACATTACCTTGCATCGTCTTGCGCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTATAATGATTGAGCTTACTCACGGTTGTTACCATATGACGTGCCGGTGCGGTCACGAGTTCTGTTATTCTTGTGGTGCGGAATACAGGGACGGCCAACAAACATGCCAATGTGCATTTTGGGATGAAGACAGCTTGACAAACTCCCTTCAAGAATCAGAACAATGGGCATGGGAGACTTCTATGATCATGGATGCGTACTCAGATCAAGAACGATCACAACTTGCGCTTATACAACGGTTCCTTGACGGCGGTTTTAGTCTCAGTGACCATAATCCCTACCAATCTCCTCCTCCTCAATGTACAGAATCCTTTGTAGACCCTTTGAAGGATCTTCATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGACAACTACTATGAAGATTACATGCAATAA 1566 0.4106 MEDQDFLGYEQFVHDGREEEEEDEFCSCCEDETDEEEREEEKDEEEWKETEETVVEGLKEELDEFSVKMFFKGLSITGVENSTSGFSGIGVFMERSSNLPPIRVQKRLDFYADEPMVDYLALMDGLLEALQNKIRRVYAFTDSELLYKITFEKNLDTPLLMALRERILEHANNFETFDLKLIPSIDLEQPMQLATVAMGLVTFPVNGEKLLENCSICCDDKPVPMMITLKCSHTFCSHCLRSYADGKLQCCQVPIRCPQPGCRYCISTPECKSFLPFTSFESLEKALSEANIVQSERFYCPFPNCSVLLDPCECLSAMDGSSSQSDNSCIECPVCQRFICVDCGVPWHSSMSCEEYQSLPEEERDASDITLHRLAQNKRWKRCQQCRIMIELTHGCYHMTCRCGHEFCYSCGAEYRDGQQTCQCAFWDEDSLTNSLQESEQWAWETSMIMDAYSDQERSQLALIQRFLDGGFSLSDHNPYQSPPPQCTESFVDPLKDLHQLPWLERFVSVISDNYYEDYMQ* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2988 521 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 20 520 - -
Mal4g2988 521 SUPERFAMILY RING/U-box 366 430 - -
Mal4g2988 521 MobiDBLite consensus disorder prediction 16 49 - -
Mal4g2988 521 Gene3D - 67 200 IPR036397 GO:0003676
Mal4g2988 521 ProSiteProfiles Zinc finger RING-type profile. 214 258 IPR001841 -
Mal4g2988 521 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 20 520 IPR031127 GO:0004842|GO:0016567
Mal4g2988 521 ProSitePatterns Zinc finger RING-type signature. 231 240 IPR017907 -
Mal4g2988 521 Coils Coil 48 68 - -
Mal4g2988 521 SUPERFAMILY RING/U-box 212 290 - -
Mal4g2988 521 Pfam IBR domain, a half RING-finger domain 373 422 IPR002867 -
Mal4g2988 521 Pfam IBR domain, a half RING-finger domain 293 353 IPR002867 -
Mal4g2988 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 295 IPR013083 -
Mal4g2988 521 SMART ibrneu5 281 353 IPR002867 -
Mal4g2988 521 SMART ibrneu5 363 422 IPR002867 -
Mal4g2988 521 Gene3D - 351 468 - -
Mal4g2988 521 MobiDBLite consensus disorder prediction 1 49 - -
Mal4g2988 521 ProSiteProfiles TRIAD supradomain profile. 210 428 IPR044066 -
Mal4g2988 521 Pfam Reverse transcriptase-like 84 183 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2988 Mal-Chr4 89921043 89928365 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2988 66 413 C3H Transcription Factor Family AT2G19610 25.691 7.36e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2988 - - mtr:MTR_2g028870 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g2988 4 89921043 89928365 Mal4g2988 4 89921043 89928365 ECH