Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2930 ATGCAGAAGAAATCTCCATTACCGTTGATCGAAACCATTGCGAACAAGAAGAAGGTGGAAATGTGTAGCAAGGAGTCGCTTGTGAAGGTTCTAAGATGGCATTTTGGTTACTCTGATTTTAGGGGTTTGCAATTGGAAGCTATTCAAGCTGTGCTTTCAGGAAGAGATTGTTTTTGTCTCATGCCAACTGGAGGAGGCAAGTCAATGTGTTATCAGATCCCTGCATTGGCAAAAGAAGGAATCGTGCTTGTAGTTTGTCCTTTAATAGCCTTAATGGAAAACCAAGTGATGGCACTAAAGGAGAAAGGAATTGCTGCAGAGTTTCTCTCCTCAACAAAAACGGCAAATGCGAAAGAGAAGATTCATGAGGACCTTGCTGCTGGAAAACCGTCTACAAGGCTGCTATATGTGACTCCAGAGTTGATAGCAACCCCGGGGTTTATGTCAAAGCTGACAAAGATTTATTCCAGGGGGTTGCTAAGTCTCATTGCCATTGACGAGGCACATTGCATCTCTTCCTGGGGTCATGATTTCAGACCTAGCTACCGTAAGCTTTCAACTCTAAGAAGCCACCTACCAGATGTACCAATATTAGCTCTAACTGCAACTGCTGTTCCTAAGGTTCAGAAGGATGTAGTGGAATCCTTGCAGATGCAAAATGCATTAATACTGAAGACTTCTTTTAATCGTCCTAATATATATTATGAAGTTAGATACAAAGATATATTGGATGATGCTTATGCTGATTTATCTGATAGACTCAAATCTATGGGAGATATTTGTGCGATAGTTTACTGCCTTGAACGTTCCATGTGTGATGACTTGTCAGCTCATCTATCCGAAAGAGGCATTTCTTGTGCTGCTTATCATGCAGGACTGAATAATAAAATGCGTACATCCGTGCTACATGACTGGATTTCTTCAAAAACAAAAGTCGTTGTTGCCACTGTTGCTTTTGGGTATGGCATCGATAGAAAGGATGTGAGAATTGTGTGCCACTTCAATATTCCGAAGTCAATGGAAGCATTCTATCAAGAGTCCGGCAGAGCTGGTCGTGATCAATTGCCCTCTACAAGTCTGTTGTACTATGGAGTAGATGATCGCAAAAAAATGGAATTTATATTAAGGAACTCAGGTAGCAAGAAGTCACAATCATCAAGTTCACAAGTTGAATCAACCAGAATGTCCCTGACTGCTTTCAATCAGATGGTTGAATATTGTGAAGGATCTGGATGTCGTAGGAAAATGATTCTCGAGAGTTTTGGGGAGCAGGTAACAGCATCACTATGTGGAAAAACGTGCGACTCCTGTAGACACCCAAACTTAGTTGCCAGAAATTTGGAGGATCTCACAGCTGCTTGTGCTCTACGCCATAAAGGCGGCTCTCGAGTTTTCATTTCCAGTTCCACTGATGCAATTGATGGAGGACAGTTATCTGAATTCTGGAATCGAGATGAGGAAGCAAGTGGATCAGAGGAAGATATTTCCGACATAGATTGTGACGGTAATGAGGTTGTCAACAACCTAGCCCGGTCAAAGGTTCAATCCAGACTGGGAGTAAATGAAAAGCTTGATTTGTTACAGAGGGCAGAAGAAAAGTACTATCAAAATGAGAACGCTGATAAACAGAGAAACAAAGTTGACAAGAATGCTATTTCTGATGCATTGCGAGAGGCAAGCAGGCAAAGATTACAAAATGCTTTAAAAGAGGCTCAGCAACGGCTTGACGACTTTAAGATTGATATGGAAACCTCGGCATCTCTTCTCGAAGATGAATGCTACAAGAAATACGGCAAGACTGGCAAATCATTCTATTATTCCAAAGTGGCAAGTACTATCAGGTGGTTGAGAACTACGAGTTCCGTCGATCTGATGAACCGACTTCGTGAAATTGATGCTTCCTCATCACTGGGTGTCTTCTCTGAAGCCGAACATCCCCTCACACCACCACCTGTTTCATATCCTTGTGCAAAAGAAGAAACTGGCAATGAGCTCTCAGGAAATGCTACAACAGAAACAATCCCATGTGATGTGCCAACTGAAAGTTCTTTTAATACAAACTTGCCTCCTATACCATCCTTCTCTGAATTTGTAAATAGTAGGAAAGCGAAAAGGGATCAATCAAGTGACACAAAGAAACACTCATCAAGAGTAGAAAAGAAGATGAGGATACCGTAG 2178 0.4174 MQKKSPLPLIETIANKKKVEMCSKESLVKVLRWHFGYSDFRGLQLEAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKEGIVLVVCPLIALMENQVMALKEKGIAAEFLSSTKTANAKEKIHEDLAAGKPSTRLLYVTPELIATPGFMSKLTKIYSRGLLSLIAIDEAHCISSWGHDFRPSYRKLSTLRSHLPDVPILALTATAVPKVQKDVVESLQMQNALILKTSFNRPNIYYEVRYKDILDDAYADLSDRLKSMGDICAIVYCLERSMCDDLSAHLSERGISCAAYHAGLNNKMRTSVLHDWISSKTKVVVATVAFGYGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGVDDRKKMEFILRNSGSKKSQSSSSQVESTRMSLTAFNQMVEYCEGSGCRRKMILESFGEQVTASLCGKTCDSCRHPNLVARNLEDLTAACALRHKGGSRVFISSSTDAIDGGQLSEFWNRDEEASGSEEDISDIDCDGNEVVNNLARSKVQSRLGVNEKLDLLQRAEEKYYQNENADKQRNKVDKNAISDALREASRQRLQNALKEAQQRLDDFKIDMETSASLLEDECYKKYGKTGKSFYYSKVASTIRWLRTTSSVDLMNRLREIDASSSLGVFSEAEHPLTPPPVSYPCAKEETGNELSGNATTETIPCDVPTESSFNTNLPPIPSFSEFVNSRKAKRDQSSDTKKHSSRVEKKMRIP* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2930 725 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 242 394 IPR001650 -
Mal4g2930 725 SMART ultradead3 36 238 IPR014001 -
Mal4g2930 725 MobiDBLite consensus disorder prediction 663 694 - -
Mal4g2930 725 Pfam Helicase conserved C-terminal domain 261 352 IPR001650 -
Mal4g2930 725 MobiDBLite consensus disorder prediction 699 725 - -
Mal4g2930 725 Coils Coil 561 581 - -
Mal4g2930 725 MobiDBLite consensus disorder prediction 660 725 - -
Mal4g2930 725 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 29 442 IPR004589 GO:0004386|GO:0006310
Mal4g2930 725 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 4 709 - -
Mal4g2930 725 Gene3D - 8 229 IPR027417 -
Mal4g2930 725 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 222 IPR014001 -
Mal4g2930 725 CDD SF2_C_RecQ 230 363 - -
Mal4g2930 725 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 709 - -
Mal4g2930 725 Pfam DEAD/DEAH box helicase 43 209 IPR011545 GO:0003676|GO:0005524
Mal4g2930 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 375 IPR027417 -
Mal4g2930 725 SMART helicmild6 273 354 IPR001650 -
Mal4g2930 725 Gene3D - 230 456 IPR027417 -
Mal4g2930 725 CDD DEXHc_RecQ 29 229 - -
Mal4g2930 725 Pfam RecQ zinc-binding 367 438 IPR032284 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2930 Mal-Chr4 85598715 85611050 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2930 20 397 Eukaryotic Initiation Factors Gene Family AT3G19760 21.970 2.78e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2930 - K10901 gmx:100819601 1145.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g2930 4 85598715 85611050 Mal4g2930 4 85598715 85611050 ECH