Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2909 ATGGTGAAGTCGAATGTGGAAAAACCTACCGTGGAACAAAGTGATTCATCATTGTACCGTGGAGTACGGAAGAGGAAGTGGGGGAAATATGTGTCGGAAATAAGACTACCAAACAGCCGCCAGAGAATATGGTTAGGTTCTTATGACTCCGCAGAGAAGGCGGCGCGTGCATTCGACGCGGCGATGTTTTGCTTACGTGGTGGTGGTGCTAATTTTAATTTCCCTAATGATCCATCAAACATTGTCGGAGGAAGGTCCATGACTCCTTCTCAAATTCAAGCCGCTGCTGCCCGTTGTGCAAATTCAGATATCCATCATGAGAATTCGGGTCGACCCGGTAATAACGCGGTGGAATATGAGTCGTCATCGGAGGGGACTGCATTGTTGCCTATGGAATCTGAAGCACCGTCTCCGGCAATGTCAGATGCAACGGTTCAGACAGATTGTGAATCCAAGCAAATCGGGTTGTTATCTGATTTGTTTGTAGTAAATGGGTCGGGTAAGTTTGAACCGGATTACTCGGTTTTTTTGGGTTTTGATGAATTTGGTGGAGATTTCTTTGTGCCAGATCTGCCAATTTATGATGACTATGGAGCAGAGAACTTGGATGGGTTGATAATTCATGATTCGTTTTTGTGGAATTTCTAA 648 0.4506 MVKSNVEKPTVEQSDSSLYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGGGANFNFPNDPSNIVGGRSMTPSQIQAAAARCANSDIHHENSGRPGNNAVEYESSSEGTALLPMESEAPSPAMSDATVQTDCESKQIGLLSDLFVVNGSGKFEPDYSVFLGFDEFGGDFFVPDLPIYDDYGAENLDGLIIHDSFLWNF* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2909 215 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Mal4g2909 215 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Mal4g2909 215 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Mal4g2909 215 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Mal4g2909 215 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Mal4g2909 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 215 - -
Mal4g2909 215 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Mal4g2909 215 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Mal4g2909 215 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 3 215 - -
Mal4g2909 215 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2909 Mal-Chr4 84379771 84380418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2909 1 215 AP2-EREBP Transcription Factor Family AT1G74930 46.364 1.55e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal4g2909 AP2 4.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2909 - - mtr:MTR_2g043040 253.062