Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2847 ATGGGAAACAAAGTTTGCATGCTTAATTGTGGTTGTGTCCCCATAAAATTTAATAAAAAAAGAAATACTAGAAAACTAAACCTCTCACCATCTCCAAGAACATGGCCTCATCCCCCTGATTTTCCCCGACACATAATTTTTGAAACCAATGAAATTACTATTCCCACCCCTCCTCCCATAAAAGAAGTCCCATTTTATGATTGTGAAATTTGCTGTGAAACAAAGCCTCTAAATGACTCATTCAATATACAAGGTTGCACTCATTTCTATTGCACCAAATGCATAATCAAATACATAATTTCAAAGCTTCAAGAAAACAAAATTTTCATAAATTGTCCTGAATCAGGGTGTTATGGAGTATTGAGTCCTCAATATTGCAAACCAATTTTACCTAACAATGTGATGGATTGGTGGGAAAAAGCTTTGAGTGAATCAGTGATTCCTGAAAAGAATAAATTCTATTGTCCTTTTTATGATTGTTCAGCACTTTTAATTTGGGAGAATAATCAAAGAAGAGAAAGGATTGCACAATGTAGATGTCCTCATTGCAATAGAATAATTTGTGTTCAGTGTAAAACTCCTTGGCATCCAGAAATGAGTTGTGAAAAGTTTCAGAAATTGAAGCATAGTGATGATGAGCTTATGTTTGATCTTGCTGGCAGAAAGAAATGGAAAAAGTGTCCAAATTGTAAGCATTTTATTGAAAGGTCTGAAGGATGCAATCACATGAAATGCAGGTGTTCGTACGAGTTTTGTTACCAATGTGGACAAAACATTAATCCTCCTCACAAAGATTGTAATCATTAG 807 0.3445 MGNKVCMLNCGCVPIKFNKKRNTRKLNLSPSPRTWPHPPDFPRHIIFETNEITIPTPPPIKEVPFYDCEICCETKPLNDSFNIQGCTHFYCTKCIIKYIISKLQENKIFINCPESGCYGVLSPQYCKPILPNNVMDWWEKALSESVIPEKNKFYCPFYDCSALLIWENNQRRERIAQCRCPHCNRIICVQCKTPWHPEMSCEKFQKLKHSDDELMFDLAGRKKWKKCPNCKHFIERSEGCNHMKCRCSYEFCYQCGQNINPPHKDCNH* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2847 268 ProSiteProfiles TRIAD supradomain profile. 64 268 IPR044066 -
Mal4g2847 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 147 IPR013083 -
Mal4g2847 268 SUPERFAMILY RING/U-box 65 148 - -
Mal4g2847 268 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 53 261 IPR031127 GO:0004842|GO:0016567
Mal4g2847 268 SUPERFAMILY RING/U-box 209 268 - -
Mal4g2847 268 ProSitePatterns Zinc finger RING-type signature. 86 95 IPR017907 -
Mal4g2847 268 Gene3D - 199 268 - -
Mal4g2847 268 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 53 261 - -
Mal4g2847 268 SUPERFAMILY RING/U-box 142 207 - -
Mal4g2847 268 SMART ibrneu5 202 266 IPR002867 -
Mal4g2847 268 SMART ibrneu5 136 201 IPR002867 -
Mal4g2847 268 Pfam IBR domain, a half RING-finger domain 141 201 IPR002867 -
Mal4g2847 268 Pfam IBR domain, a half RING-finger domain 221 266 IPR002867 -
Mal4g2847 268 ProSiteProfiles Zinc finger RING-type profile. 68 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2847 Mal-Chr4 82075503 82077354 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2847 62 256 C3H Transcription Factor Family AT2G19610 29.469 1.26e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2847 K11975 - pvy:116125926 255.758