Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2846 ATGGTTCTGGAGATCAACAAGAAGAAGGGGCGGCGTTCCTTTTTTCATGGCAGACGTCAAACTTTGTTTTTCCCGAAACCGAAATATCTCCTCTATGATTTACCATTCATATGCAGAAAACGAAAACAACGTTGGAATCGTAAAGTAAACAAGAAAATTGAAAAAGGAGAGTGTTCTTCAAGTTCTAAAGACTTGCTATTCGTTTGCGAAATCTGCACAGACACGAAAACAATGAACGATGCTTTTTTCATCAGCGGCTGCTCTCACGCATATTGCTCTGATTGTGTGGCGATGTACATCGGTTCCAAGCTCGAAGATAATATCATCAACATTCGGTGTCCGTCTTCTGGATGCAGTGGTTTGTTGGAAGCGGATTATTGCCATTCCATTCTTCCTCCCGAGGTTTTTGACCGATGGGGGAAGGCGTCTTGTGAGCTTTTGATTGATGAGTTAGAGAAATTATACTGTCCCTATGCAGACTGTTCGGTTCTTTTGATCAACGATGAAACGGAGGCTGTTACGAGAGCGGAATGTCCTTATTGTAAAAGGATGTTCTGTGCACAATGTAAAGTTCCATGGCATGAAGGAATCGAATGCAGACAGTTTGAGAATCTGAATGCGGACGAGAGGAGGGAAGAAGATGTTATGTTGGTGCGCCTTGCAAACGAGGAGAAGTGGAGTCGATGTCCCAATTGCAAATTTTTTGTTGCCAGAACTATGGGCTGCAACGAGATGAGATGCAGATTTATGACAGAGACCACTCTTTCTCCTTAG 774 0.4315 MVLEINKKKGRRSFFHGRRQTLFFPKPKYLLYDLPFICRKRKQRWNRKVNKKIEKGECSSSSKDLLFVCEICTDTKTMNDAFFISGCSHAYCSDCVAMYIGSKLEDNIINIRCPSSGCSGLLEADYCHSILPPEVFDRWGKASCELLIDELEKLYCPYADCSVLLINDETEAVTRAECPYCKRMFCAQCKVPWHEGIECRQFENLNADERREEDVMLVRLANEEKWSRCPNCKFFVARTMGCNEMRCRFMTETTLSP* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2846 257 SUPERFAMILY RING/U-box 66 147 - -
Mal4g2846 257 SUPERFAMILY RING/U-box 147 204 - -
Mal4g2846 257 ProSiteProfiles TRIAD supradomain profile. 65 257 IPR044066 -
Mal4g2846 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 149 IPR013083 -
Mal4g2846 257 SUPERFAMILY RING/U-box 209 247 - -
Mal4g2846 257 SMART ibrneu5 137 199 IPR002867 -
Mal4g2846 257 Pfam IBR domain, a half RING-finger domain 152 199 IPR002867 -
Mal4g2846 257 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 58 250 - -
Mal4g2846 257 Gene3D - 154 200 - -
Mal4g2846 257 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Mal4g2846 257 Gene3D - 201 250 - -
Mal4g2846 257 ProSiteProfiles Zinc finger RING-type profile. 69 114 IPR001841 -
Mal4g2846 257 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 58 250 IPR031127 GO:0004842|GO:0016567
Mal4g2846 257 Pfam Zinc finger, C3HC4 type (RING finger) 69 114 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2846 Mal-Chr4 82057960 82059775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2846 56 247 C3H Transcription Factor Family AT2G31770 25.758 3.15e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2846 K11975 - gmx:100803898 269.24