Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2845 ATGGGTCTGGAGACAACAAGAAGAAGAGGCGGTGTTCCTCCTTCCACGGCACACGTCAAATATGATCTCTTTTCCTGCAACCGAAATATCGCCTCTATCATCGAACTTTCCTGTGAAGAGGAAGACAACATCAGGATACTAAATTTCATATCCATGAATACCCCTTCTTTGAATCGTTTAAAAGACCCACAGTTCAATTGCAAAATCTGCACATGTACAAAAACAATGAAGGACGCTTTCTACATCAGTGGTTGTTTCCACGCATATTGCAAGGATTGCGTGGCGAAATACATAGGTTCCAAACTTGATGATAACATCATCAATATTCGGTGTCCTGTTCCTAGGTGCAAAGGTTTTTTAAAAGCGGAGTTTTGCCGTTCGATTCTTTCGGCCGAGGTTTTTGAACGGTGGTGTAAGGGGTTGTGTGAGGCTTTGTTTAATGTTTCGGAGAATTTCAATTGTCCATTTGCAGACTGTTCGGCTCTTTTGATCAACGATGGAACGAAAGCCGTTAGAAAATCATTTTGTCCCCATTGTAACAGGAGGTTATGTGCACAATGTAAAGTTCCGTGGCACGAAGGACTCGAATGCAGCGAGTTCGAGAAGATGAATGCGGACGAGAGGAGGAGAGAAGATGTTATGTTGATGAGCCTTGCAAAGGATATGTTGTGGAAGCGATGTCCCAATTGCAGATTTTATGTTGCCAAATATGACGGCTGCAACGAGATGATATGCAGGTAA 741 0.4291 MGLETTRRRGGVPPSTAHVKYDLFSCNRNIASIIELSCEEEDNIRILNFISMNTPSLNRLKDPQFNCKICTCTKTMKDAFYISGCFHAYCKDCVAKYIGSKLDDNIINIRCPVPRCKGFLKAEFCRSILSAEVFERWCKGLCEALFNVSENFNCPFADCSALLINDGTKAVRKSFCPHCNRRLCAQCKVPWHEGLECSEFEKMNADERRREDVMLMSLAKDMLWKRCPNCRFYVAKYDGCNEMICR* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2845 246 ProSiteProfiles Zinc finger RING-type profile. 67 115 IPR001841 -
Mal4g2845 246 SUPERFAMILY RING/U-box 62 145 - -
Mal4g2845 246 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 245 IPR031127 GO:0004842|GO:0016567
Mal4g2845 246 ProSitePatterns Zinc finger RING-type signature. 85 94 IPR017907 -
Mal4g2845 246 Pfam IBR domain, a half RING-finger domain 152 197 IPR002867 -
Mal4g2845 246 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 48 245 - -
Mal4g2845 246 SMART ibrneu5 135 197 IPR002867 -
Mal4g2845 246 Gene3D - 195 246 - -
Mal4g2845 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 149 IPR013083 -
Mal4g2845 246 SUPERFAMILY RING/U-box 144 202 - -
Mal4g2845 246 SUPERFAMILY RING/U-box 208 245 - -
Mal4g2845 246 ProSiteProfiles TRIAD supradomain profile. 63 246 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2845 Mal-Chr4 82048560 82049300 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2845 66 246 C3H Transcription Factor Family AT2G19610 30.526 1.75e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2845 K11975 - gmx:100803898 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g2845 4 82048560 82049300 Mal4g2845 4 82048560 82049300 ECH