Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2839 ATGACACCAGAGGTAATCGACCTCCGCTTCTCCGGCAAGCGACCCATCTCCTTTGTCATCGACCTTTCCGATGACGAAGACGACGATGTTAGGATCCTCAATTTCATTCCCAAAACAAACCCTTTCAGAAAACGTAAAAAAAACTACACTGAAAAAGGAGAGTCTTCAAACTCAAATAACACCCCGTTCGTTTGTGAAATCTGCACGGACACTAAAACAATGAAAGACTCTTTTTACATCAGTGGTTGCTCTCACGTTTATTGCTCTGATTGCGTGGCGAAGTACATAGGTTCCAAGGTTGAAGAAAACATTGTTAACATTCAGTGTCCTTTTCCAAAGTGCAAAGGTTTGTTAGAGGCGGATGTTTGCCGTTCTATTCTTCCGGACGAGGTTTTTGAACGGTGGGGTAAGGCATTGTGTGAGACTTTGTTCGATGTTTCGGAAAAATTCTACTGTCCATTTCCAGACTGTTCCGCTTTATTGATCAACGATGGAACGGATGCCGTTATAGAATCAGAATGTCCTAATTGTAGTAGGATGTTTTGTGCACAGTGTATGGTTCCATGGCACGAAGGAATCAAATGCGGTGAGTTCCAAAACCTGAACGCGGATGAGAGGCAGAAAGAAGATGTTATGTTTATGAAACTTGCTAAGGATAAGAAGTGGAAGAGATGTCCCAAATGCAGAATGTATGTTGCCAAAAATAAGGGCTGCAACCACATGTCCTGCAGGCATAAACAAAATATAACCTATAGGGTTGGAGTGATGAACAACATAAATTTGTTATTTTCAAAAACAAATCTTTAG 807 0.4126 MTPEVIDLRFSGKRPISFVIDLSDDEDDDVRILNFIPKTNPFRKRKKNYTEKGESSNSNNTPFVCEICTDTKTMKDSFYISGCSHVYCSDCVAKYIGSKVEENIVNIQCPFPKCKGLLEADVCRSILPDEVFERWGKALCETLFDVSEKFYCPFPDCSALLINDGTDAVIESECPNCSRMFCAQCMVPWHEGIKCGEFQNLNADERQKEDVMFMKLAKDKKWKRCPKCRMYVAKNKGCNHMSCRHKQNITYRVGVMNNINLLFSKTNL* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2839 268 SUPERFAMILY RING/U-box 139 200 - -
Mal4g2839 268 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 23 256 - -
Mal4g2839 268 ProSitePatterns Zinc finger RING-type signature. 83 92 IPR017907 -
Mal4g2839 268 ProSiteProfiles Zinc finger RING-type profile. 65 113 IPR001841 -
Mal4g2839 268 Pfam IBR domain, a half RING-finger domain 148 195 IPR002867 -
Mal4g2839 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 147 IPR013083 -
Mal4g2839 268 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 23 256 IPR031127 GO:0004842|GO:0016567
Mal4g2839 268 Gene3D - 193 251 - -
Mal4g2839 268 ProSiteProfiles TRIAD supradomain profile. 61 268 IPR044066 -
Mal4g2839 268 SUPERFAMILY RING/U-box 206 244 - -
Mal4g2839 268 SMART ibrneu5 133 195 IPR002867 -
Mal4g2839 268 Pfam Zinc finger, C3HC4 type (RING finger) 65 110 IPR018957 GO:0046872
Mal4g2839 268 SUPERFAMILY RING/U-box 60 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2839 Mal-Chr4 81520204 81522870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2839 65 255 C3H Transcription Factor Family AT2G19610 29.703 1.25e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2839 K11975 - gmx:100803898 314.694