Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2838 ATGCAAGCATCTCCTTCAGGTACCACTCGTTATAGGTGGCAGCGTCCACAACACGGTCAGATTAAGTGTAATATTGATGCTTCCTTCTCTGAGTCACTTAATAGAACAGGTATAGGCATATGCATTCGAGATCATGAAGGCACCTATGTCTTGGCCAAAACGATGTGGGTCTCTCCTCGACATTCTGTTCCCATAGGGGAGGCTCTAGGGCTTTTTTATGCTATGCAATGGCTTGGGGATATGCAATTTGATAATGTGAATTTTACTTCGGACTCCAAAATAGTTACCGATGCTTTTACTAAAAATCAGGAAGATGTCACGGAATTTGGTAATATCATTGCATCGTGTAGACATCTTTTTGCATCTTCTTTTAATAACTCTAAGGTAGAGTTTTCCAGGCGGCAAGCAAACATGGCAGCTCATTCTCTAGCTAAGGTTGCTACGTTATCAGCTAGTCCCACTTTTTATACTGATACAGTGGGTTTCACCAAATCAACTAGAATTCCAATGTGTCATTCGACACCACCAGAGGTAATCGACCTCGAAACTTTCCACTTCTCAGGCAAGCGACCCATCTCCTCCATCATTGACCTTTCTGATGACGAAGACGACGAAGATGTTAGGATCCTCAATTTCATTCCCGAAACTACCCCTTTCAGAAAACGTAAAAGAAACTGCACTGAAAAAGGAGAGTCTTCAAACTCAAATAACACTCCGTTCGTTTGCGAAATCTGCACTGACACTAAAACAATGAAGGATGCTTTCTACATGAGCGGTTGCTCTCACGTGTATTGCTCTGATTGTGTGGCGAAATACATAGGTTCCAAGGTTGAAGAAAACATCGTCAACATTCCCTGTCCTTTTCCAAAGTGCAAAGGTTTGCTGGAGGTTGAGTTTTGCCGTTCTATTCTTCCGGCCGAGGTTTTTGAACGGTGGGATAAGGAATTGTGTGAGTCTTTGTTCGATGTTCCGAATAAATTCTATTGTCCTTTTCCAGACTGTTCAGCGCTTTTGATCGATGATGGAACGGAGGCTGTTAGAAATTCAGAATGCCCTAATTGTAATAGGATGTTTTGTGCACAATGTAAGGTTCCATGGCATGAAGGAATTAAATGCAGTGAGTTCAAGAAGCTGAACGCGGACGAGAGGCAGAAAGAAGATGTTATGTTTATGAAACTTGCAAAGGATCGGATGTGGAGGCGATGTCCTAAGTGCAGAATGTATGTTGCCAAACTTGATGGCTGTGACCACATGTCCTGCAGGTTGCATTTCTATTTAATCTCCTCTTGCTTTATGATTTCGTGA 1305 0.4238 MQASPSGTTRYRWQRPQHGQIKCNIDASFSESLNRTGIGICIRDHEGTYVLAKTMWVSPRHSVPIGEALGLFYAMQWLGDMQFDNVNFTSDSKIVTDAFTKNQEDVTEFGNIIASCRHLFASSFNNSKVEFSRRQANMAAHSLAKVATLSASPTFYTDTVGFTKSTRIPMCHSTPPEVIDLETFHFSGKRPISSIIDLSDDEDDEDVRILNFIPETTPFRKRKRNCTEKGESSNSNNTPFVCEICTDTKTMKDAFYMSGCSHVYCSDCVAKYIGSKVEENIVNIPCPFPKCKGLLEVEFCRSILPAEVFERWDKELCESLFDVPNKFYCPFPDCSALLIDDGTEAVRNSECPNCNRMFCAQCKVPWHEGIKCSEFKKLNADERQKEDVMFMKLAKDRMWRRCPKCRMYVAKLDGCDHMSCRLHFYLISSCFMIS* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2838 434 Gene3D - 327 373 - -
Mal4g2838 434 Pfam Reverse transcriptase-like 24 146 IPR002156 GO:0003676|GO:0004523
Mal4g2838 434 Gene3D - 374 425 - -
Mal4g2838 434 SUPERFAMILY RING/U-box 383 420 - -
Mal4g2838 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 322 IPR013083 -
Mal4g2838 434 Gene3D - 19 152 IPR036397 GO:0003676
Mal4g2838 434 Pfam Zinc finger, C3HC4 type (RING finger) 242 287 IPR018957 GO:0046872
Mal4g2838 434 ProSiteProfiles TRIAD supradomain profile. 238 434 IPR044066 -
Mal4g2838 434 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 194 430 - -
Mal4g2838 434 ProSiteProfiles Zinc finger RING-type profile. 242 290 IPR001841 -
Mal4g2838 434 SMART ibrneu5 310 372 IPR002867 -
Mal4g2838 434 SUPERFAMILY RING/U-box 313 377 - -
Mal4g2838 434 SUPERFAMILY RING/U-box 237 325 - -
Mal4g2838 434 SUPERFAMILY Ribonuclease H-like 20 150 IPR012337 -
Mal4g2838 434 ProSitePatterns Zinc finger RING-type signature. 260 269 IPR017907 -
Mal4g2838 434 CDD RNase_H_like 23 145 IPR044730 -
Mal4g2838 434 Pfam IBR domain, a half RING-finger domain 315 372 IPR002867 -
Mal4g2838 434 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 194 430 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2838 Mal-Chr4 81504225 81506036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2838 242 421 C3H Transcription Factor Family AT2G19610 31.579 6.64e-21 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2838 K11975 - gmx:100803898 302.753