Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2837 ATGAGTGTCAAAACGACAATAAAAACCACCTCACGAGACGTCGTTGTCGTTCCACCTTCAACGGCAGAAATAATCGACGTTGAAACATTTCACTTCTCTTCCACCACCGGCACCACCACCACCTCCGCCGTCATCAACCTCTCCGACGGCGAAGACGATGATGACGTCAGAATCCTCAATTTCATCCCCAAAAACACCTCTTTCGGAAAACGGAAAAGAATCAAAATCGAAAAAGGTGAATCATCGAAAGCAAATTCTAATCCAAACGACGTGCCGTTTATCTGTGAAATCTGCACCGAAACCAAAACGACAAAGGAAGCGTTTTTCATCAGCGGTTGTAACCATGCTTATTGCTCTGATTGTGTTGCGCTTTACGTTGGTTCAAAAGTGGAAGAGAATGTGATCAATGTGCGTTGTCCTGTTTCTGGATGTAGTGGGTTATTGGAAGCTGAGGATTGCCGGAGGATTTTACCGGCTGCGGTATTTGATCGGTGGGGGAAGGCGTTATGCGAGGCGCTGTTTGATGTTAATGAGAAATTTTACTGTCCGTTTGCGGATTGTTCTGCGCTTTTGATTAATGATGGGACGGAGGCTGTTAGGCAATCGGTGTGTCCGAATTGTAGGAGGATGTTTTGTGCACAATGTAAGGTTCCGTGGCATGAAGGGATCGAATGTAGCGAGTTTGAGAAGCTGAATGCGGATGAGAGAGGGAAAGATGATGTTATGTTGATGAAACTCGCCAAGGATATGAAGTGGAGACGATGCCCTAGTTGTAGGTATTATGTCGCTAAGTCCGAGGGTTGCTTGTACATGAAATGCAGGTGTGGAATTGCCTTCTGTTACAACTGTGGGGTTCGTAACACAAATACCAGCCATTATTGCAGCAACTGTAAACACTAA 900 0.4544 MSVKTTIKTTSRDVVVVPPSTAEIIDVETFHFSSTTGTTTTSAVINLSDGEDDDDVRILNFIPKNTSFGKRKRIKIEKGESSKANSNPNDVPFICEICTETKTTKEAFFISGCNHAYCSDCVALYVGSKVEENVINVRCPVSGCSGLLEAEDCRRILPAAVFDRWGKALCEALFDVNEKFYCPFADCSALLINDGTEAVRQSVCPNCRRMFCAQCKVPWHEGIECSEFEKLNADERGKDDVMLMKLAKDMKWRRCPSCRYYVAKSEGCLYMKCRCGIAFCYNCGVRNTNTSHYCSNCKH* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2837 299 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 7 274 IPR031127 GO:0004842|GO:0016567
Mal4g2837 299 SMART ibrneu5 163 225 IPR002867 -
Mal4g2837 299 SMART ibrneu5 235 297 IPR002867 -
Mal4g2837 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 176 IPR013083 -
Mal4g2837 299 Gene3D - 180 226 - -
Mal4g2837 299 ProSiteProfiles Zinc finger RING-type profile. 95 141 IPR001841 -
Mal4g2837 299 SUPERFAMILY RING/U-box 93 176 - -
Mal4g2837 299 Pfam IBR domain, a half RING-finger domain 178 225 IPR002867 -
Mal4g2837 299 SUPERFAMILY RING/U-box 169 230 - -
Mal4g2837 299 SUPERFAMILY RING/U-box 236 298 - -
Mal4g2837 299 ProSiteProfiles TRIAD supradomain profile. 91 299 IPR044066 -
Mal4g2837 299 Gene3D - 227 299 - -
Mal4g2837 299 SMART ring_2 95 142 IPR001841 -
Mal4g2837 299 ProSitePatterns Zinc finger RING-type signature. 113 122 IPR017907 -
Mal4g2837 299 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 7 274 - -
Mal4g2837 299 Pfam Zinc finger, C3HC4 type (RING finger) 95 140 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2837 Mal-Chr4 81466107 81471055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2837 95 285 C3H Transcription Factor Family AT2G19610 30.348 8.60e-20 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2837 K11975 - gmx:100803898 357.451