Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2795 ATGGCAGTAGTGGTTTCATCACCGAGGATGGCGGTTTCAGAAGCTTTGAACGGTGCTAGAAGGTTTGAGAATGCGTCTCTGTATGTTGGTGATCTTGAAAGGAACGTGAATGAGTCACAACTTTATGAATTGTTCAATCAGATTGCTCTGGTGATTTCAGTTAGGGTTTGCAGGGACAAAATGACGCAATCATCTCTTGGTTATGCTTATGTCAACTTCTCCAACACTCATGATGCTGCTAATGCGATGGAGAATTTGAACTATATTACTCTGAACGGGAAGCCCATCCGTATCATGTTTTCTCATCGAGATCCTACCATTCGAAAAACTGGTTATGCAAATGTCTTCATCAAAAATCTAGACACATCAATAGATAGCAAAGCATTACATGATACTTTTGCTAACTTTGGACATGTGCTTTCTTGTAAGGTTGCTATGGATAGCAATGATAAATCTAGAGGATATGGTTTTGTACAATATGACAATGATGAGTTTGCGAAGAATGCCATTGAAAAATTGGATGGCATGCTGATCAATGATAAGAAAGTTTATGTAGGATATTTTATTCGGCGTCAAGAAAGGTTGGGAAATGCATCAGGAAATGGATCACCTAAGTTCACTAATGTGTATGTGAAAAACCTTTCTGAAACATATACTGATGAGGACCTTAAGCAACTTTTCAACATTTATGGTGTAATAACGAGTGCCGTGATCATGAAAGATGAGAATGGGAACTCTAGATGTTTTGGTTTTGTGAATTTCCAAAGCCCAGATTCAGCGGTTTTTGCTATTGAGAAGCTGAACGGGAGCACAACCAATGATGGAAAGGTTTTATTTGTCGGGAGGGCTCAGAGAAAATCGGAAAGGGTGGCAAAGTTGAAGGCAGAATTTGAGCAAGAAAAGCTAAAAAGATATGAGAAATTACAAGGTGCTAATTTATACCTGAAAAACATTGATAAGAGTCTTAACGATGAAAAGTTGAAGGAGATGTTTTCTGAGTTTGGAACAATAACATCTTGCAAGGTAATGTTTGATTCTCATGGCCATAGCAAGGGTTTCGGTTTTGTTGCCTTTTCCACTCCCGAGGAAGCGAGTAAAGCTATAAACAGGATGAATGGAAAGATAATTGGACAGAAGCCCCTATATGTTGTTGTGGCCCAACGCAAAGAAGATAGGAAAGCTCTTTTGCAGGCTCAATTTTCTCAAATCCAAGCACCAGATGGAAACACACCTTTTCCTGCAAGAATTGCAGGATATCTTCCAATTGGTCCTGAACTTGCTCCTCAACAATTGTATTATGGGCAAGGTACACATGGTCTCATGTCTCCTCAACCAAACAGATACAGTTTCCAACAACAATTCATGCCAGATATGCCATATGGTGTTGCCCCATATTACACAATGCCATACCACCTTCAGAGGCAGAGTTATTTTGGGCATAGGATGAGTGTTCGTCCAATTGGTAACTTCCAACAGATGCTATCTCATAACTCCAACCAAGGGTTTAAATACAATGGTGAAAATGGCACGGTTCCGTCTATAGATCCCGAAGGTCAGATGAGTCAAATGATGGACCCATCTACATTTGGTGCAACTCCTATTAACAATCACCATCATGGTGCATTATCTAACAACTCTCTTGCTTCAACTTTGGCTTCTGCTACCCTAGAAAATCAACGTCGGATGTTGAGGGAACATTTACATCCTCTGGTGGATCGTCTTACAACAAACAATCAGACAACAAAGGTGACAGGAATGTTGCTGGAAATGGATCAATCAGAGATTATCCATCTGATTGAGTCTCCCGAAGAATTGAAAATAAAGGTGTCTGAGGCAATGCAAGTCCTTCGTGAATCTTCACCAGGTCCTGCAGTTGGTGATCAGCTTGATTCATAA 1896 0.4019 MAVVVSSPRMAVSEALNGARRFENASLYVGDLERNVNESQLYELFNQIALVISVRVCRDKMTQSSLGYAYVNFSNTHDAANAMENLNYITLNGKPIRIMFSHRDPTIRKTGYANVFIKNLDTSIDSKALHDTFANFGHVLSCKVAMDSNDKSRGYGFVQYDNDEFAKNAIEKLDGMLINDKKVYVGYFIRRQERLGNASGNGSPKFTNVYVKNLSETYTDEDLKQLFNIYGVITSAVIMKDENGNSRCFGFVNFQSPDSAVFAIEKLNGSTTNDGKVLFVGRAQRKSERVAKLKAEFEQEKLKRYEKLQGANLYLKNIDKSLNDEKLKEMFSEFGTITSCKVMFDSHGHSKGFGFVAFSTPEEASKAINRMNGKIIGQKPLYVVVAQRKEDRKALLQAQFSQIQAPDGNTPFPARIAGYLPIGPELAPQQLYYGQGTHGLMSPQPNRYSFQQQFMPDMPYGVAPYYTMPYHLQRQSYFGHRMSVRPIGNFQQMLSHNSNQGFKYNGENGTVPSIDPEGQMSQMMDPSTFGATPINNHHHGALSNNSLASTLASATLENQRRMLREHLHPLVDRLTTNNQTTKVTGMLLEMDQSEIIHLIESPEELKIKVSEAMQVLRESSPGPAVGDQLDS* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2795 631 SMART rrm1_1 312 384 IPR000504 GO:0003723
Mal4g2795 631 SMART rrm1_1 114 186 IPR000504 GO:0003723
Mal4g2795 631 SMART rrm1_1 26 99 IPR000504 GO:0003723
Mal4g2795 631 SMART rrm1_1 208 281 IPR000504 GO:0003723
Mal4g2795 631 CDD RRM1_I_PABPs 26 105 - -
Mal4g2795 631 SUPERFAMILY RNA-binding domain, RBD 206 390 IPR035979 GO:0003676
Mal4g2795 631 PANTHER POLYADENYLATE-BINDING PROTEIN 18 622 - -
Mal4g2795 631 SMART poly_2 555 619 IPR002004 GO:0003723
Mal4g2795 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Mal4g2795 631 CDD RRM4_I_PABPs 310 388 - -
Mal4g2795 631 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 543 621 IPR002004 GO:0003723
Mal4g2795 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 274 IPR000504 GO:0003723
Mal4g2795 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 97 IPR000504 GO:0003723
Mal4g2795 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Mal4g2795 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Mal4g2795 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Mal4g2795 631 Gene3D - 541 620 - -
Mal4g2795 631 PANTHER RNA BINDING PROTEIN 18 622 - -
Mal4g2795 631 Pfam Poly-adenylate binding protein, unique domain 551 616 IPR002004 GO:0003723
Mal4g2795 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Mal4g2795 631 Gene3D - 113 187 IPR012677 -
Mal4g2795 631 Coils Coil 283 303 - -
Mal4g2795 631 Gene3D - 190 293 IPR012677 -
Mal4g2795 631 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 25 617 IPR006515 GO:0003723
Mal4g2795 631 Gene3D - 294 395 IPR012677 -
Mal4g2795 631 SUPERFAMILY RNA-binding domain, RBD 24 192 IPR035979 GO:0003676
Mal4g2795 631 SUPERFAMILY PABC (PABP) domain 453 619 IPR036053 GO:0003723
Mal4g2795 631 CDD RRM2_I_PABPs 111 187 IPR045305 -
Mal4g2795 631 Gene3D - 14 112 IPR012677 -
Mal4g2795 631 SMART rrm2_1 114 186 IPR003954 GO:0003676
Mal4g2795 631 SMART rrm2_1 312 384 IPR003954 GO:0003676
Mal4g2795 631 SMART rrm2_1 26 99 IPR003954 GO:0003676
Mal4g2795 631 SMART rrm2_1 208 280 IPR003954 GO:0003676
Mal4g2795 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2795 Mal-Chr4 79782857 79788384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2795 24 625 Eukaryotic Initiation Factors Gene Family AT1G71770 53.647 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2795 K13126 - gmx:100783163 823.542