Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2759 ATGCGGAGCCACATTATGTGTACTGGGTGTAGGAACATCTTGCTTTACCCTAGAGGAGCAAGCAATGTTTGCTGTGCATTGTGCAACACAATTACCTCTGTTCTTCCTGTTCTTCCTCCCGGAATGGAAATGGCACAACTTTATTGTGGAGGTTGTAGAACATTGCTAGTGCACGCACGCGGAGCTACTAGTGTGAGATGTTCCTGCTGTAACACTATAAATCTTGTACCAGATTCTAATCAAATGAGCCATATCCATTGTGGGAACTGCCGGACAACACTCATGTATCCATATGGAGCTCCCTCTGTCAAATGTGCAATTTGTCACTATATTACTAATGTCAATATGACCAATGGAAGGCCACCAACTCCTGTACGGACACCTAACCCAACAACCAGCTCCGAAACGTCAAGACCCCGCTTTGAGAGCCAAACTGTAGTAGTAGAAAATCCTATGTCCGTTGATTCAAGTGGGAAATTGGTAAGCAATGTTGTTGTGGGCGTTACAACACAGAAGAAATGA 522 0.4444 MRSHIMCTGCRNILLYPRGASNVCCALCNTITSVLPVLPPGMEMAQLYCGGCRTLLVHARGATSVRCSCCNTINLVPDSNQMSHIHCGNCRTTLMYPYGAPSVKCAICHYITNVNMTNGRPPTPVRTPNPTTSSETSRPRFESQTVVVENPMSVDSSGKLVSNVVVGVTTQKK* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2759 173 PANTHER PROTEIN LSD1 1 171 IPR040319 -
Mal4g2759 173 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Mal4g2759 173 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 46 76 IPR005735 -
Mal4g2759 173 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 84 113 IPR005735 -
Mal4g2759 173 MobiDBLite consensus disorder prediction 119 144 - -
Mal4g2759 173 PANTHER LSD1-LIKE PROTEIN 1 171 - -
Mal4g2759 173 MobiDBLite consensus disorder prediction 129 144 - -
Mal4g2759 173 Pfam LSD1 zinc finger 7 31 IPR005735 -
Mal4g2759 173 Pfam LSD1 zinc finger 87 111 IPR005735 -
Mal4g2759 173 Pfam LSD1 zinc finger 49 73 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2759 Mal-Chr4 78075432 78081448 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Mal4g2759 zf-LSD1 3.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2759 - - gmx:100776394 276.559