Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2727 ATGGCGGTGAATCTCACCGCAAACGCAATTCCGGCGATAATCGCTGGCGACGTTGACGCGAAACCGTTGGTTCAAGTTCTCGACATTGCATCAATCGTAAGCAACAAAAACTCTCAGCAACGATACCGTCTTCTTCTCTCCGACGCCGTTTCGTCTCACCACGCTATGCTCGCTGCTCAACTCAACGAACGAGTCAAAACCGGTGGAGTTAAGCAAGGTTCCATCGTTCAGCTTCTCGATTACATTTGCACTTCGTTCCAGAATCGCAAGATTATTATGGTGCTTAACATGGAAACCATCATACCTGATTGTGAAATCATTGGGAATCCGAAGTCATTTGTGGATTCACAATTACCAGTTCAGAAAGCATTGCCTGATAACACTGTGGCTGGTTCATCCAGAAGTATTAATAATAATTTAGCTGCTCAAAATGCTGGTAGTAATGGGCAGAATTTTAGGCCAACAGTTCAACCTTCATACCAACCTCCTCCGCTTTACAATAATAATTTGGCTGCTCCAAATGCTGGTAGTAATGGGCAGAATTTCAGGCCAACAGTTCAACCTCCATACCAACCTCCTCCACTTTACAAAGGTCGTGGCGCAGTTATGAAAAATGAGGCGCCAGCACGTGTAATACCTATAGCTGCTTTAAATCCCTATCAGGGTAGATGGGCCATCAAGGCAAGGGTTACTGCGAAAGGGGATTTGCGCCGCTATAACAATGCTCGTGGAGATGGAAAAGTCTTCTCCTTTGATCTCCTTGATTCTGATGGAGGTGAAATACGGGTAACTTGCTTTAATGCTGTTGTTGACCGTTTCTATGAAGCAATTGAGGTTGGTAAAGTTTACTTGATATCGAAAGGTAGCTTGAAACCTGCACAAAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTATGCTGGATTTAAATTCAACGGTTGAGCTTTGCCCAGATGAGGATGGTTCTATACCTAGACAGCAATTCTCCTTCAGACCTATCAGTGACATTGAGATTGTTGAGAGTAACGCTATCCTGGATGTTATTGGGGTTGTGACATCTGTAAATCCTTCAGTTCCCATCTTAAGGAAGAATGGAATGGAAACACTGAGAAGGATTTTGAATCTAAAGGACAATTCTGGCAGGAGTGTTGAGCTAACACTTTGGGGTGAATTCTGCAACAGGGAAGGACAAAAGCTGCAAGAGATGGTAGATGCTGGGGTTTTCCCTATATTAGCAGTAAAGGCTGGGAAGGTTAATGAATTCAGTGGAAAGTCTATAGGCTCTATTTCTACTACACAGCTTTTCATAAATCCAGATTTCCCTGAGGCTCAGACCTTAAGAAATTGGTTTGATCAAGTTGGGAAAGATTCTGCCTCTCTATCAATTTCTAAGGACATTACTCATGGAGGACCCAAGAATGAGATACGCAAAACTGTGTCTCAAATCAAAGATGAAGGTCTAGGGCGTTCAGACAAGCCAGACTGGATATCAATGAGGGCAACCATATCATTCATCAAGACCGATACATTTTGTTACACAGCTTGCCCTCTGAGGATTGGAGATCGACAGTGCAATAAGAAAGCGACGAAGTCAGGAGACACAAAATGGCAGTGTGATAGGTGCAACCAGGAGTTTGAGGAATGTGATTATCGATACCTTCTCCAAGCTCAAATCCTGGATCATACTGGATTAACTGGGGTAACTGCTTTCCAGGAAGCAGGGGAAGAGATTATGGGGTACTCAGCAAAAGATCTGTATGTGTTAAAGAATGAACAGGAGGATGATGAGACGTTTGGAGATATAATCAAGAGTAGACTCTTCAATCAGTTTGTGTTTAAGCTGAAAATCAAAGAGGAATTATATAATGAGGAACTGAAGGTAAAGATTACAGTAGTTAAGGCAGATAAGGTGAATTATTCTGCAGAGAGTAGGTCCATGCTTGATTTGATTTCCAAGTTCTGTAGGCAGTGA 1974 0.425 MAVNLTANAIPAIIAGDVDAKPLVQVLDIASIVSNKNSQQRYRLLLSDAVSSHHAMLAAQLNERVKTGGVKQGSIVQLLDYICTSFQNRKIIMVLNMETIIPDCEIIGNPKSFVDSQLPVQKALPDNTVAGSSRSINNNLAAQNAGSNGQNFRPTVQPSYQPPPLYNNNLAAPNAGSNGQNFRPTVQPPYQPPPLYKGRGAVMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEAIEVGKVYLISKGSLKPAQKNFNHLKNEWEIMLDLNSTVELCPDEDGSIPRQQFSFRPISDIEIVESNAILDVIGVVTSVNPSVPILRKNGMETLRRILNLKDNSGRSVELTLWGEFCNREGQKLQEMVDAGVFPILAVKAGKVNEFSGKSIGSISTTQLFINPDFPEAQTLRNWFDQVGKDSASLSISKDITHGGPKNEIRKTVSQIKDEGLGRSDKPDWISMRATISFIKTDTFCYTACPLRIGDRQCNKKATKSGDTKWQCDRCNQEFEECDYRYLLQAQILDHTGLTGVTAFQEAGEEIMGYSAKDLYVLKNEQEDDETFGDIIKSRLFNQFVFKLKIKEELYNEELKVKITVVKADKVNYSAESRSMLDLISKFCRQ* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2727 657 SUPERFAMILY Nucleic acid-binding proteins 328 455 IPR012340 -
Mal4g2727 657 SUPERFAMILY Nucleic acid-binding proteins 1 109 IPR012340 -
Mal4g2727 657 Pfam Replication factor-A C terminal domain 496 646 IPR013955 -
Mal4g2727 657 Gene3D - 3 114 IPR012340 -
Mal4g2727 657 Gene3D - 463 655 IPR012340 -
Mal4g2727 657 Pfam OB-fold nucleic acid binding domain 225 305 IPR004365 GO:0003676
Mal4g2727 657 Gene3D - 323 462 IPR012340 -
Mal4g2727 657 CDD RPA1_DBD_C 480 653 IPR013955 -
Mal4g2727 657 CDD RPA1_DBD_A 213 316 - -
Mal4g2727 657 SUPERFAMILY Nucleic acid-binding proteins 477 654 IPR012340 -
Mal4g2727 657 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 653 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal4g2727 657 SUPERFAMILY Nucleic acid-binding proteins 211 323 IPR012340 -
Mal4g2727 657 Pfam Replication factor-A protein 1, N-terminal domain 5 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mal4g2727 657 CDD RPA1_DBD_B 345 452 - -
Mal4g2727 657 CDD RPA1N 9 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mal4g2727 657 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 651 - -
Mal4g2727 657 Pfam Replication protein A OB domain 334 438 IPR031657 -
Mal4g2727 657 PANTHER REPLICATION FACTOR A 1, RFA1 2 651 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal4g2727 657 Gene3D - 210 320 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2727 Mal-Chr4 76727351 76730802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2727 26 653 Core DNA Replication Machinery Family AT2G06510 67.619 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2727 K07466 - gmx:100792409 1001.5