Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2636 ATGCTGAGCTTCTTGCTGAGTTTGAACAATCAAGTGATTATGGCAAATCATTTGACTATTCAAAGAATGTTCTTGATCCTCCCAGTTGTAGTTAATGGAAATGATGGAAATGATACAACGAGGCTTTGGGGGTTGCTAGTTTGTCATCACACTTCACCACACCATGTGTCTTTCCCGGTTCGTCATGCTTGTGAGTTTGTAGTGAAGACTTTTGGAATGCAGCTTTACATGGAGATTCAATTGGCCTCACAGATGGCAGAGAAGAGAATTCTAAAAACGCAAACCATGTTGTGTGACATGCTCCTACGCGATGCACCATTTGGCATTGTGACTCAATCCCCAAGTATCATGGATCTTGTAAAGTGTGATGGCGCCGCCTTGTATTATGATGAAAAATGTTGGTTGTTAGGCATAACCCCAACTAAATTACAGGTGAAAGATATTGCAGAATGGCTACATAGCAATTATGGCGACTCAACAGGTTTGACCACTGAAAGTTTGGTTGATGCTGGTTATCCAGGTGCTACTTTGTTGGGGGATGCAGTTTGTGGCATGGCCTCAGCAAGAATCAATCCAAGACATATCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAATAAAATGGGGAGGAGCCAAACACCATCCAGCGGATAAAGATGATGGAGGTAAAATGAACCCAAGAACGTCGTTTAAAGTTTTTCTCGAAGTAGTTAAAAGCAAAAGTTTGCCTTGGGAAATATCAGAAATCAACGCGATTCACTCATTGCAACTAATCATGCGAGATTCATTCCAAGACACGGACAGCAGTGGTCCAAAGACTCTAAAAGATTTTGAGAAAGGTGATGCTCCAATTGGAGGGTCGCATGAAATCAGTTCAATTGCACTTGAAATGGTTAGATTAATTGAAACAGCAGCAGTCCCAATATTTGGGGTTGATTTGGACGGCCTGATCAACGGATGGAATGTAAAAATTGCTCAATTGACAGGTCTGCAGACTAGTGAAGCTATGGGAAAATCCCTAGCAAATGAAGTTGTACATGTGGACTCACGTGAAACTCTGACAATTATTTTGAGAAGAGCTTTTCAAGGCCAAGATAACAAAAATGTTGAGGTGAAAATAAACCGTTCATTGCTTCATCAAGAAAAGGAAGTTGTATATCTCATGGTCAGTTCCTGCACAAGTAGAGACTACACAAATGCTATTGTTGGGGTATGCTTTGTAGGTCAAGACATCACTTTTGAGAAAGAGGTTCTAAACAAATTAATCAAGTTGGAAGGCGATTACAAAGCTATCATGCAGAGTCTTAATCCGCTGATTCCGCCAATATTTGCTTCTGATGAGAATGCTTGCTGCTCTGAATGGAATGCAGCCATGGAAAGTGTTACCGGATGGAAAAAAGATGAGGTCATAGGAAAAATGCTTCTTGGGGAAATCTTTGGAAGTTTTTGTCGATTAAAAGGTCAAGATGCACTAACTGATTTTATGATTTTACTGTATCGCGGAATAAGTGGCCAGGATTCTGAGAAGTCACCATTCGGATTTTATGATAGAAATGGAGAGTTTATAGAGACTTATATAACAACAAACAAAAGGGAAGATGCAGGTGGAGATATAATCGGTTGTTTCTGCTTCTTGCAGATTGTAACGGAAGATTTCAATCAACCCTCTCAAGGACACAGGTCTAAATGCCGAGAAAGGATCTCGGAATCTAAGGATTTATCCTATATACTACAAGAGATGAAGAGCCCTTTAAATGGTATCCTATTCACACACAAACTTTTGGAGAATACAGACATCTCTGAAAACCAGAAACAAATTCTTGACACTAGTGAAGCATGTGAAAGACAAATAATGGCGATTATTCAGGATACAGAATTAGGAAGTATTAACGAAGGCACTTGGCAGCTAAACATTGAAGAATTTCTTCTGGGAAATATTTTAGATGCCATTGTTAGTCAAGTCATGATGCTGATAAAAGGAAAGGACTTACAGTTATTTCATGAAATACCCGGCGAAATCCAAACACTTTCTCTTTACGGCGATCAAATTAGACTTCAGATGGTCTTGTCTGACATTTTGCGCAATATAGCTAGCCATACACCTGCTCCAAATGGCTGGGTAGAAATGAAGATTTCACCTGGTTCAAAAATAATACAAGATGGGAATGAGTTTATCCATTTAAAGTTCAGAATGACACATTCTGGTCAAGGACTTCCTTCTGCCGTTCTGCACGATATGTTTTACGGCGAGAACCAATGGACTACACAAGAAGGTCTAGGGCTATATATGTCAAGGAAAATCCTTAGTAGGATGAATGGTGATGTCCAATATGTAAGAGAACAAAATAAGTGTTATTTCCTCATTGACATTGAACTAAGAACAAGAAAAGAAAGGCAAAGGAATTTGAAAACAGAGACAAGCATGCTAAGTAGAAGGGATGTGGAGGGTCATCTGTAA 2460 0.3963 MLSFLLSLNNQVIMANHLTIQRMFLILPVVVNGNDGNDTTRLWGLLVCHHTSPHHVSFPVRHACEFVVKTFGMQLYMEIQLASQMAEKRILKTQTMLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALYYDEKCWLLGITPTKLQVKDIAEWLHSNYGDSTGLTTESLVDAGYPGATLLGDAVCGMASARINPRHILFWFRSHTAKEIKWGGAKHHPADKDDGGKMNPRTSFKVFLEVVKSKSLPWEISEINAIHSLQLIMRDSFQDTDSSGPKTLKDFEKGDAPIGGSHEISSIALEMVRLIETAAVPIFGVDLDGLINGWNVKIAQLTGLQTSEAMGKSLANEVVHVDSRETLTIILRRAFQGQDNKNVEVKINRSLLHQEKEVVYLMVSSCTSRDYTNAIVGVCFVGQDITFEKEVLNKLIKLEGDYKAIMQSLNPLIPPIFASDENACCSEWNAAMESVTGWKKDEVIGKMLLGEIFGSFCRLKGQDALTDFMILLYRGISGQDSEKSPFGFYDRNGEFIETYITTNKREDAGGDIIGCFCFLQIVTEDFNQPSQGHRSKCRERISESKDLSYILQEMKSPLNGILFTHKLLENTDISENQKQILDTSEACERQIMAIIQDTELGSINEGTWQLNIEEFLLGNILDAIVSQVMMLIKGKDLQLFHEIPGEIQTLSLYGDQIRLQMVLSDILRNIASHTPAPNGWVEMKISPGSKIIQDGNEFIHLKFRMTHSGQGLPSAVLHDMFYGENQWTTQEGLGLYMSRKILSRMNGDVQYVREQNKCYFLIDIELRTRKERQRNLKTETSMLSRRDVEGHL* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2636 819 SUPERFAMILY GAF domain-like 24 75 - -
Mal4g2636 819 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 681 785 IPR003594 -
Mal4g2636 819 Gene3D PAS domain 441 554 - -
Mal4g2636 819 CDD HATPase_Phy-like 680 793 IPR044767 -
Mal4g2636 819 ProSiteProfiles PAS repeat profile. 428 480 IPR000014 -
Mal4g2636 819 Pfam His Kinase A (phospho-acceptor) domain 574 633 IPR003661 GO:0000155|GO:0007165
Mal4g2636 819 SUPERFAMILY PYP-like sensor domain (PAS domain) 442 544 IPR035965 -
Mal4g2636 819 CDD PAS 305 412 IPR000014 -
Mal4g2636 819 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 634 791 IPR036890 -
Mal4g2636 819 Gene3D - 632 799 IPR036890 -
Mal4g2636 819 SMART pas_2 430 497 IPR000014 -
Mal4g2636 819 SMART pas_2 296 363 IPR000014 -
Mal4g2636 819 Gene3D - 84 257 IPR043150 -
Mal4g2636 819 CDD HisKA 574 624 IPR003661 GO:0000155|GO:0007165
Mal4g2636 819 ProSiteProfiles PAS repeat profile. 294 365 IPR000014 -
Mal4g2636 819 ProSiteProfiles Histidine kinase domain profile. 576 795 IPR005467 -
Mal4g2636 819 TIGRFAM sensory_box: PAS domain S-box protein 301 419 IPR000014 -
Mal4g2636 819 SUPERFAMILY PYP-like sensor domain (PAS domain) 303 413 IPR035965 -
Mal4g2636 819 SMART HKATPase_4 681 795 IPR003594 -
Mal4g2636 819 ProSiteProfiles PAC domain profile. 368 424 IPR000700 -
Mal4g2636 819 Pfam Phytochrome region 92 266 IPR013515 GO:0006355|GO:0009584
Mal4g2636 819 SUPERFAMILY GAF domain-like 87 265 - -
Mal4g2636 819 CDD PAS 439 547 IPR000014 -
Mal4g2636 819 Pfam PAS fold 297 412 IPR013767 GO:0006355
Mal4g2636 819 Pfam PAS fold 428 547 IPR013767 GO:0006355
Mal4g2636 819 Pfam GAF domain 23 79 IPR003018 GO:0005515
Mal4g2636 819 Gene3D PAS domain 295 417 - -
Mal4g2636 819 Gene3D - 33 240 IPR029016 -
Mal4g2636 819 PRINTS Phytochrome signature 109 129 IPR001294 GO:0006355|GO:0009584
Mal4g2636 819 PRINTS Phytochrome signature 194 213 IPR001294 GO:0006355|GO:0009584
Mal4g2636 819 PRINTS Phytochrome signature 390 407 IPR001294 GO:0006355|GO:0009584
Mal4g2636 819 PRINTS Phytochrome signature 227 245 IPR001294 GO:0006355|GO:0009584
Mal4g2636 819 PRINTS Phytochrome signature 410 430 IPR001294 GO:0006355|GO:0009584
Mal4g2636 819 PRINTS Phytochrome signature 297 313 IPR001294 GO:0006355|GO:0009584
Mal4g2636 819 PRINTS Phytochrome signature 316 331 IPR001294 GO:0006355|GO:0009584
Mal4g2636 819 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 25 69 IPR016132 -
Mal4g2636 819 PANTHER TWO-COMPONENT HISTIDINE KINASE 25 795 - -
Mal4g2636 819 SMART HisKA_10 569 633 IPR003661 GO:0000155|GO:0007165
Mal4g2636 819 PANTHER PHYTOCHROME 25 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2636 Mal-Chr4 71860930 71864783 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2636 14 795 Histidine Kinase Gene Family AT4G18130 55.654 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2636 K12123 - gmx:100808192 1252.27