Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2624 ATGGGTCGTGCTCGTGGAAAATTAACTATGAAACACCTTCAAGACGAGAAAGCTCGAAAATCAGCTTTCAATCAGAGAACGAAGGGATTGGCAAAAAAAGTTTCTGAATTTTCTAGCAAGTTTGAAGTTGAAACTTGCTTGATTGTATACGATGGTGATGGTAGACCAATGACTTGGCCACAAGACTCCACAATTGTAGAGTCGATGCTTAAAAATTACGAGCACCAAAAGATTGAGGCAACTCCCAATGAATTCAATATCAAAGACTATTTTGAAAATAGGAAGATTATGGTTGAAGCTGAGATTTCTAAAGTGCGCAAGTTGATTATAAATAACAAGTATCCAACTTGGGGTCCTTGTTTCCAGAACATGGATGCGGAGCAACTCAAAGCCTTCAATGCTATTATAAATGCCAAGATTGAAGCTTGTAATCAAAGAATTAACATGCTGAAAAGTATGAACCAAGGTGATCAAACTAGTCCCATGCATGACACTCCTCAAAGGAAGCATATCCTTGATCATGATCATTTAAAGCAAGTTTATGATGTTAGTGGAATGGTTCAAATGCAATATAGCTCTGATGATCCTTTGAAGCCACTTGATGATATCATTAATGAGACCGTGGATTTCACTAATCAAGATAGTTTGCCTCCTGTTTCATCAACAAACAAAATTGGTGAAGTTGTGGATTTGGATGATCTAATGGTTGAACCTGAGGAATGGGCTAATCAACATGGTGAGTTTGTGGAGTTGGATGATCTAGTGGCTGAGGAATGGAATACTCAACTTGTTAACTTTGATGATGGTTATAATCAACAAGAAAATGATTGGATTAATCAACCTGAAGTGTTCGAATTGCAAGATATTACATTTTTATCTCAGAATGAGCAATAA 894 0.368 MGRARGKLTMKHLQDEKARKSAFNQRTKGLAKKVSEFSSKFEVETCLIVYDGDGRPMTWPQDSTIVESMLKNYEHQKIEATPNEFNIKDYFENRKIMVEAEISKVRKLIINNKYPTWGPCFQNMDAEQLKAFNAIINAKIEACNQRINMLKSMNQGDQTSPMHDTPQRKHILDHDHLKQVYDVSGMVQMQYSSDDPLKPLDDIINETVDFTNQDSLPPVSSTNKIGEVVDLDDLMVEPEEWANQHGEFVELDDLVAEEWNTQLVNFDDGYNQQENDWINQPEVFELQDITFLSQNEQ* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2624 297 PANTHER MADS BOX PROTEIN 5 277 - -
Mal4g2624 297 Gene3D - 15 96 IPR036879 GO:0003677|GO:0046983
Mal4g2624 297 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 59 IPR002100 GO:0003677|GO:0046983
Mal4g2624 297 MobiDBLite consensus disorder prediction 1 21 - -
Mal4g2624 297 SMART madsneu2 3 62 IPR002100 GO:0003677|GO:0046983
Mal4g2624 297 SUPERFAMILY SRF-like 5 77 IPR036879 GO:0003677|GO:0046983
Mal4g2624 297 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Mal4g2624 297 PANTHER PROTEIN, PUTATIVE-RELATED 5 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2624 Mal-Chr4 71421634 71422527 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2624 1 145 Type I MADS-box Gene Family AT5G55690 31.818 1.09e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal4g2624 SRF-TF 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2624 - - mtr:MTR_2g049530 249.98