Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2613 ATGGGTCGTGCTCATGGGAAATTAACTATGAAAAACATTCAAAGTGAGAAAGCTCGGAAATCAGCTTTCAATCAGAGAAGCAAGGGATTGGTAAAAAAGATTTCTGAATTTTCTAGCAAGTTTGGAGTTGAAGTCTGCTTAATTGTGTATGATGGTGATGGAGATGGTAGAGCAATGACTTGGCCACAAGACTCGACATTTGTTCAGTCTATACTTGAAAAATATGAGCAACAAAAGATTGAGAGTATTACTCCAAAGGAATTTGATCTGAAAGACTATTTTGCAAATAAGAACAATATGGTGGAAGCTGAGATTTCCAAAGTGCGTAAAGAGATCGTGATGAACAAGTATCCAACTTGGGGGCCATGCTTCAATAAAATGAAAGGGGAGCAACTCAAAACTTTCATTGGTATTATACATTCAAAGATTCAAGCTTGTAATCGCAAAATTAGCATGCAAAAAGAAATGCAACAAAGTACTGAAACTGGTTTCATGCCAAACACTTCTCAAATTCAAAGTATGGTTCCAAAGAATGTTTTCTCTTCACATTCAAGCGAGATCAATGTTACGGATAGCTTTCCTCAAATGCAACGTATCCATGATGATCCTTTGAAGTCGCTTAATAATATGAATGGGACAATGAATTTCAGTAATGATGTTAGTTTGCCGCCAGTTTCCTCAACAAACCAACTTGATACACTTGTAGAGTATGGTTTAACGGATTGGGCGAATCAACTTAGTGAAATAGAGGTATTGGATGATCCAGTTGCTAAACCTGATGTGTTTGCATGGCAAGACATTTCCTTTATGTTTCAGAATGAGCAAGGTGCAACTTTGGATGCATTGCTCTAA 852 0.3709 MGRAHGKLTMKNIQSEKARKSAFNQRSKGLVKKISEFSSKFGVEVCLIVYDGDGDGRAMTWPQDSTFVQSILEKYEQQKIESITPKEFDLKDYFANKNNMVEAEISKVRKEIVMNKYPTWGPCFNKMKGEQLKTFIGIIHSKIQACNRKISMQKEMQQSTETGFMPNTSQIQSMVPKNVFSSHSSEINVTDSFPQMQRIHDDPLKSLNNMNGTMNFSNDVSLPPVSSTNQLDTLVEYGLTDWANQLSEIEVLDDPVAKPDVFAWQDISFMFQNEQGATLDALL* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2613 283 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 58 IPR002100 GO:0003677|GO:0046983
Mal4g2613 283 Gene3D - 15 100 IPR036879 GO:0003677|GO:0046983
Mal4g2613 283 SUPERFAMILY SRF-like 6 95 IPR036879 GO:0003677|GO:0046983
Mal4g2613 283 PANTHER PROTEIN, PUTATIVE-RELATED 5 230 - -
Mal4g2613 283 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Mal4g2613 283 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Mal4g2613 283 PANTHER MADS BOX PROTEIN 5 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2613 Mal-Chr4 71125257 71126108 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2613 1 148 Type I MADS-box Gene Family AT5G55690 35.065 1.07e-15 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal4g2613 SRF-TF 8.3e-11 No_clan