Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2608 ATGAAGCAGTCTTTTGATCCTTCATTTTTCGGTCCTTCCAAGATTCCACCTATAAATGCAGCTGGAAAATCGGGGCATGGTGCATTGGAAGTTTCATCTGGATCTGATTCATACCATGCTTCATCTGATGCTAGTTTCTTTTCTAGCTCATTGCCTGTTCTTCCACATGAAAAGTTGAACTTAAATGAAACTGAAAATGGTTTTCAATCTCTTGATGACATCTCAACTGACTTTAAAAAGCTTCATCAAGAGGTAGAACTTGATGGTTCCCCTGGCAATGGTAATAATCATGCAATCGGAACCATGCTTCCTGATGACGATGAAGAGCTTTTGGCTGGCATAATGGATGATTTTGACCTAAGTGGTTTACCTGGTTCCCTTGAGGACTTAGAAGAGTATGATCTTTTTGATAGTAGTGGAGGTTTGGAACTAGAAACGGATCCACAGGAAAGCCTTAGTGCGGGAATATCTAAGTTAAGCTTTTCTGATAGCTCTGTTGGCAATAGTTTGCCCCCTTATTCTTTACCTAATGGCGTGGGAGGCGGAGCCGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTGTTTGTTCGAAATATTAACAGCAATGTGGAGGATACAGAGCTGCGAACACTTTTTGAGCAATACGGTGATATTAGAACCCTGTATACTGCATGTAAGCACAGGGGGTTTGTAATGATATCATATTATGACATCCGTGCTGCTCGGACAGCTATGCGTGCATTACAGAATAAACCTTTGCGGCGAAGGAAACTTGACATTCACTTTTCAATACCAAAGGATAATCCATCAGACAAAGATATCAATCAAGGAACCTTGGTAGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTCCGCCAAATCTTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTTATTGAATACTATGATGTAAGAGGTGCAGAAGCAGCACTTAAATCATTAAATAGGAGTGACATAGCGGGTAAACGCATAAAGCTTGAACCAAGTCGGCCTGGAGGAGCTCGTCGCAATTTGATGCTCCAACTGAATCAAGAGCATGACCAAGACGAGTCTCGAAGTTTTCGATATCAAGTGGGTTCACCTCTAGCCAGCTCTCCGCCAGGTAATTGGTTACAGTTCAACAGTCCTGTCGAGAAGAGTTCATTGCCAACTATCAATCATTCTCCCGGTTCCAAAATCATGAGCCCAACAACCAGCAATCATTTATCGGGATTAGCTTCAATTTTGCAACCACAGTTATCGAACACGGTGAAGGCCGCAACTATTGGCCAGGACATAAGAAGGAGTAGTCATGGAGACCACATATTTACCAATATGAGTTCATCCGCTGGATCTACTTTCAACTCACATTCACTTCCAGAGCCAAAATTTAGTCAATATCGTGGAGCTTTGTCCTCGTTTGGTGCATCAACATCAAATGGATCTTCAGTGGAAACCTTGACCGCGCCACAGTTTTTATGGGGAAGCCCAAACTTATCCTCAGAGCCAACCAAACCTTCAGCTTGGCCGAGGCCATCTGTGGGACATCAACTCAGTACATCGAATGGAACGGGTCATGCTTTCCCATACTCAAGTCAGAACAATTCCTTTGTCAGTTCGTCCCAGCAGCAACATCACCATCATCATGTCGGTTCTGCTCCTTCAGGTTTGCCTTTTGAGAGGCACTTCGGTTTTTTCCCTAAGTCATCTGAATCTTCTTTGATGAATAATGTTGGGTATGGAGGCATGAGTCTAGGGAACAATGATGGAAATTACATGCTTAATACCAGCATTTCTGGTAATGTCAGCGTTTCTATTCCAAGAAATATGCCTGACAATGGTTTATCAAACTTCAGAATGAGATCTTCTCCGATACTTAGCCCTGTATATTTAGGTAATGGTCCTTATCCAGGACTGCTACCTTCTGCTATGGAGAGTTTTACTGATCGTGTTAGGAGTAGATGGATCGACAACAATGGAAGCCAAGTTGACAGCAAGATGCTATTTCAGCTCGACTTAGATAAGATTAGAAGTGGCGAAGATACACGGACTACACTAATGATAAAGAATATCCCAAATAAATACACCTCAAAAATGTTGTTAGCTGCCATTGATGAAACTCACAAGGGCACCTATGATTTTCTCTATCTGCCGATTGACTTTAAGAATAAATGCAACGTCGGTTATGCATTTATCAACATGTTGTCACCCTTGCTTATTATTCCATTCTACGAGACATTCCACGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTATTTGGCATATGCTCGAATCCAAGGGAAGAATGCCCTTGTGAACCATTTCCAAAATTCAAGTTTGATGAATGAAGATAAACGCTGTCGACCTATTGTCTTCCACTCAGATGGTTCTGAAGCTGGTGATCAGATCATACAAGAGCATCTCCCCTCCAACTCCAACAAGGTGTATGTTCAGGCAGTTAAGTCAAGTGAGTTACAATTAAGCGATTCCTTCGGATACCCTCAAATGGATGGTCCTCCTTTGAGTTTGGATGCAAATTAA 2598 0.4207 MKQSFDPSFFGPSKIPPINAAGKSGHGALEVSSGSDSYHASSDASFFSSSLPVLPHEKLNLNETENGFQSLDDISTDFKKLHQEVELDGSPGNGNNHAIGTMLPDDDEELLAGIMDDFDLSGLPGSLEDLEEYDLFDSSGGLELETDPQESLSAGISKLSFSDSSVGNSLPPYSLPNGVGGGAVAGEHPYGEHPSRTLFVRNINSNVEDTELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRGAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQEHDQDESRSFRYQVGSPLASSPPGNWLQFNSPVEKSSLPTINHSPGSKIMSPTTSNHLSGLASILQPQLSNTVKAATIGQDIRRSSHGDHIFTNMSSSAGSTFNSHSLPEPKFSQYRGALSSFGASTSNGSSVETLTAPQFLWGSPNLSSEPTKPSAWPRPSVGHQLSTSNGTGHAFPYSSQNNSFVSSSQQQHHHHHVGSAPSGLPFERHFGFFPKSSESSLMNNVGYGGMSLGNNDGNYMLNTSISGNVSVSIPRNMPDNGLSNFRMRSSPILSPVYLGNGPYPGLLPSAMESFTDRVRSRWIDNNGSQVDSKMLFQLDLDKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDETHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLLIIPFYETFHGKKWEKFNSEKVAYLAYARIQGKNALVNHFQNSSLMNEDKRCRPIVFHSDGSEAGDQIIQEHLPSNSNKVYVQAVKSSELQLSDSFGYPQMDGPPLSLDAN* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2608 865 CDD RRM3_MEI2_like 702 787 IPR034454 -
Mal4g2608 865 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 849 - -
Mal4g2608 865 SMART rrm1_1 282 350 IPR000504 GO:0003723
Mal4g2608 865 SMART rrm1_1 701 777 IPR000504 GO:0003723
Mal4g2608 865 SMART rrm1_1 197 265 IPR000504 GO:0003723
Mal4g2608 865 Pfam RNA recognition motif 2 699 795 IPR007201 -
Mal4g2608 865 MobiDBLite consensus disorder prediction 511 565 - -
Mal4g2608 865 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 269 IPR000504 GO:0003723
Mal4g2608 865 CDD RRM1_MEI2_like 195 271 IPR034453 -
Mal4g2608 865 Gene3D - 280 379 IPR012677 -
Mal4g2608 865 MobiDBLite consensus disorder prediction 1 36 - -
Mal4g2608 865 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 262 IPR000504 GO:0003723
Mal4g2608 865 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 348 IPR000504 GO:0003723
Mal4g2608 865 MobiDBLite consensus disorder prediction 511 571 - -
Mal4g2608 865 Gene3D - 185 279 IPR012677 -
Mal4g2608 865 SUPERFAMILY RNA-binding domain, RBD 701 786 IPR035979 GO:0003676
Mal4g2608 865 CDD RRM2_MEI2_like 280 350 - -
Mal4g2608 865 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 354 IPR000504 GO:0003723
Mal4g2608 865 PANTHER PROTEIN MEI2-LIKE 2 2 849 - -
Mal4g2608 865 SUPERFAMILY RNA-binding domain, RBD 193 356 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2608 Mal-Chr4 70980662 70985155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2608 191 389 Eukaryotic Initiation Factors Gene Family AT1G71770 26.009 2.07e-07 52.8