Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2488 ATGTCGAAAAAACCGAAGACATTGGCGGCATTTAATGTCGTGATCCAAGGCAAAAAGGAAACTCTCAAGGAGTACGTCGAGAGGTTTACCCGTGAAGGCGTAAAAATCTATGGCGCACACAAAAACTTAAAGTGTTTCATCTTTGAAAACAACCTCCGTGAGGACTATAAGTTCAAGGAGGAGCTAGGCCTGGGGAAAAGGGAGGCACCACCTGGAGAGAAGCCAGAACTTGTTAGGACCCATCTTCGTAACATGATTATTGTACCTGCGATGATTGGGAGCATAATTGGAGTGTACAATGGAAAGACTTTTAACCAGGTTGAAATCAAACCTGAGATGATTGGTCATTACCTTGCTGAGCTCTCTATTTCATACATGCCTGTTAAGCATGGTAGACCTGGTACTGGTGCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGA 444 0.4437 MSKKPKTLAAFNVVIQGKKETLKEYVERFTREGVKIYGAHKNLKCFIFENNLREDYKFKEELGLGKREAPPGEKPELVRTHLRNMIIVPAMIGSIIGVYNGKTFNQVEIKPEMIGHYLAELSISYMPVKHGRPGTGATHSSRFIPLK* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2488 147 PANTHER BNAA03G55820D PROTEIN 62 147 - -
Mal4g2488 147 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 62 147 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mal4g2488 147 TIGRFAM uS19_arch: ribosomal protein uS19 21 147 IPR005713 GO:0003735|GO:0006412|GO:0015935
Mal4g2488 147 Hamap 30S ribosomal protein S19 [rpsS]. 26 136 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mal4g2488 147 Pfam Ribosomal protein S19 69 130 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mal4g2488 147 Gene3D 30s Ribosomal Protein S19; Chain A 13 147 IPR023575 GO:0003735|GO:0005840|GO:0006412
Mal4g2488 147 PRINTS Ribosomal protein S19 family signature 100 112 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mal4g2488 147 PRINTS Ribosomal protein S19 family signature 112 127 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mal4g2488 147 PRINTS Ribosomal protein S19 family signature 80 99 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mal4g2488 147 SUPERFAMILY Ribosomal protein S19 64 131 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2488 Mal-Chr4 65980138 65983076 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2488 53 147 Cytoplasmic Ribosomal Protein Gene Family AT5G09510 82.105 5.41e-51 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2488 K02958 - gmx:100499781 164.851