Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2467 ATGGCTTTTCATCACGACCATCTATCACATGAAATCAATTTTCAACCATTCAATGAAGAGCAACAGTTAAATCAAAGCAGGGACATGCAAAGGCTACTACCATTCACCGGATCAGCGCCGAATTGGCTCAACAACGCCGTAAACCTACGGCAACAGAATTTCCTCCACTTACAACCAGACACATCACAAAACGAAGATGTAAGAGGAATGAACATGATGGACAAAACCCGGGATCGGAACCGGACTGAAAGCAACAACACGGAATCAGAAGAGTTGTCACAATACAAAGCGGACATTCTTGGTCATCCTCTCTACGATCAGCTTCTATCTGCTCATGTTTCCTGTCTGCGAATTGCTACGCCCGTCGATCAGCTTCCGCGGATCGACGCGCAGCTCCAGCAGTCGCAGCGTGTGGTGGATAAGTATTCTTCACTTGCTAATGGTGTTGTTGATGAAAAGGAGCTTGATCAATTCATGACGCATTATGTTCTCCTGCTTTGTGCTTTTAAAGAACAATTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAGCAGTCTCTTCAAAGCTTAACCGGTGTATCTCCTGGTGAAGGGAGTGGTGCAACAATGTCGGACGATGAAGACGACCAAGCAGAAAGCAATGCAAACATATACGAAGGAAGCCTTGATGGAGGTGATAGTCTGAGCTTTGGTCCTCTTGTTCCTACTGAAAGTGAAAGATCTTTAATGGAACGTGTGAGGCAGGAGTTGAAGCATGAGCTAAAACAGGGTTACAAGAGTAAGATTGTGGACATAAGAGAAGAAATTCTACGGAAGAGAAGAGCGGGAAAGCTCCCTGGTGACACCACATCCCTTTTGAAAGCTTGGTGGCAATCACACTCTAAATGGCCTTATCCCACAGAAGAAGACAAGGCTAGGTTGGTCCAGGAAACAGGACTTCAATTAAAGCAGATAAATAATTGGTTCATTAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCATCATCTACTGGCTCCAAAACCAAGCGCAAGAGTGGTGCAGGTGAAACAAGTAATCAGAGCTTCATGTGA 1098 0.4481 MAFHHDHLSHEINFQPFNEEQQLNQSRDMQRLLPFTGSAPNWLNNAVNLRQQNFLHLQPDTSQNEDVRGMNMMDKTRDRNRTESNNTESEELSQYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSSLANGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGSGATMSDDEDDQAESNANIYEGSLDGGDSLSFGPLVPTESERSLMERVRQELKHELKQGYKSKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGSKTKRKSGAGETSNQSFM* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2467 365 ProSiteProfiles 'Homeobox' domain profile. 277 340 IPR001356 GO:0003677
Mal4g2467 365 SMART KNOX1_2 93 137 IPR005540 GO:0003677|GO:0005634
Mal4g2467 365 Gene3D - 283 359 - -
Mal4g2467 365 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 23 358 - -
Mal4g2467 365 SMART HOX_1 279 344 IPR001356 GO:0003677
Mal4g2467 365 MobiDBLite consensus disorder prediction 334 365 - -
Mal4g2467 365 Pfam KNOX2 domain 150 199 IPR005541 GO:0003677|GO:0005634
Mal4g2467 365 MobiDBLite consensus disorder prediction 70 86 - -
Mal4g2467 365 SMART KNOX2_2 145 200 IPR005541 GO:0003677|GO:0005634
Mal4g2467 365 MobiDBLite consensus disorder prediction 200 219 - -
Mal4g2467 365 Pfam ELK domain 257 278 IPR005539 GO:0003677
Mal4g2467 365 SUPERFAMILY Homeodomain-like 279 343 IPR009057 -
Mal4g2467 365 CDD homeodomain 280 341 IPR001356 GO:0003677
Mal4g2467 365 Pfam KNOX1 domain 95 136 IPR005540 GO:0003677|GO:0005634
Mal4g2467 365 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 23 358 - -
Mal4g2467 365 Pfam Homeobox KN domain 297 336 IPR008422 GO:0003677|GO:0006355
Mal4g2467 365 ProSiteProfiles ELK domain profile. 257 277 IPR005539 GO:0003677
Mal4g2467 365 SMART ELK_2 257 278 IPR005539 GO:0003677
Mal4g2467 365 MobiDBLite consensus disorder prediction 56 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2467 Mal-Chr4 65254060 65259981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2467 93 362 Homeobox Transcription Factor Family AT5G11060 82.847 2.61e-167 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mal4g2467 KNOX2 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2467 - - gmx:100816347 609.757