Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal4g2335 | ATGGAGCAACAACGTCATGTAGGAGAAATTGTTGATGATGGTATAGTGTTGACCTTTCATTGGAATTCTATTAGAAATTCTTATGAAATGTACCGACATATGAGGGATGACAACCAAGCTCCGCATATTGAGGATTGGGACAAGCGTCTTTATATGGGACACCTCATTTTCCGTGAAAACAATAACTTAAGTGAGCGTTTAAGAAGAGGAAACCCTGTAAGTAGTAGGATTGAAGATGGAGCACCAGGTTCTACCTGTTCCATATGTCTTGAAGATATTTCTGTTGGTTCTGAAGTGATTCAACTGCCCAACCCGTGTTGTCATGTTTATCATGAAGAATGCATTATGAGGTGGCTCGACAGGTCTAACAGTTGCCCTTTGTGTCATAGGCCTATCTCATAA | 402 | 0.4055 | MEQQRHVGEIVDDGIVLTFHWNSIRNSYEMYRHMRDDNQAPHIEDWDKRLYMGHLIFRENNNLSERLRRGNPVSSRIEDGAPGSTCSICLEDISVGSEVIQLPNPCCHVYHEECIMRWLDRSNSCPLCHRPIS* | 134 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal4g2335 | 133 | Pfam | Ring finger domain | 85 | 128 | IPR001841 | - | |
| Mal4g2335 | 133 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 133 | IPR013083 | - | |
| Mal4g2335 | 133 | SMART | ringv_2 | 85 | 129 | IPR011016 | GO:0008270 | |
| Mal4g2335 | 133 | SUPERFAMILY | RING/U-box | 85 | 132 | - | - | |
| Mal4g2335 | 133 | ProSiteProfiles | Zinc finger RING-type profile. | 86 | 129 | IPR001841 | - | |
| Mal4g2335 | 133 | SMART | ring_2 | 86 | 128 | IPR001841 | - | |
| Mal4g2335 | 133 | PANTHER | SI:CH211-59O9.10 | 73 | 132 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal4g2335 | Mal-Chr4 | 58124772 | 58125173 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal4g2335 | 76 | 130 | C3H Transcription Factor Family | AT5G66070 | 50.000 | 1.00e-10 | 55.5 |