Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2325 ATGTCCTTGTTTGCACTCTTCATCCGCCATTGCTCATCCTCTTACACCTACAACTGTAACCTAATTGTCAATCTATTCCGCCGCGGATTCAACCGTCAAGCCATCAACAAGTGCCCCGTCCTCGTCTACTCCGCCATAAAAGACCACAAAATCGGTAAAACTACGCTTGAATGCGCCATTTGCTTGAATGAGTTTCAACACAAGGATAAAATAAGGTTGCTTCCGAAATGTGATCATGTCTTTCACCAAGATTGTATTGATGGTTGGTTACTCTCTCACATGAATTGTCCTATTTGTCGCTCCAAACTTACCCCTGTTCGGGAAATTGCAATTCCAATAATCACAACAACAACAACCGAATCTGGTCGTGAATTTTCAGAGCAACCACAAGAACAGAGTAACATCGTTGAGGACAAATTCTCATTCATGGGATCACATTCAACGAGACATTCATTGCCAGATGCATGGAGTTCAAAGAGAGTATGTTATAGAAGTAATGATAAGCAGTTGTCCTTGCCCATAGAGTTTCTTGAATAA 537 0.4153 MSLFALFIRHCSSSYTYNCNLIVNLFRRGFNRQAINKCPVLVYSAIKDHKIGKTTLECAICLNEFQHKDKIRLLPKCDHVFHQDCIDGWLLSHMNCPICRSKLTPVREIAIPIITTTTTESGREFSEQPQEQSNIVEDKFSFMGSHSTRHSLPDAWSSKRVCYRSNDKQLSLPIEFLE* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2325 178 Pfam Ring finger domain 57 100 IPR001841 -
Mal4g2325 178 SUPERFAMILY RING/U-box 34 107 - -
Mal4g2325 178 SMART ring_2 58 99 IPR001841 -
Mal4g2325 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 106 IPR013083 -
Mal4g2325 178 ProSiteProfiles Zinc finger RING-type profile. 58 100 IPR001841 -
Mal4g2325 178 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 1 132 - -
Mal4g2325 178 PANTHER RING FINGER DOMAIN-CONTAINING 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2325 Mal-Chr4 57667643 57668179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2325 1 104 Rapid Response to Elicitors AT3G05200 43.750 4.80e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2325 K10664 - egt:105976389 125.946