Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2322 ATGGCCGATTCAGACCACGACCGCCATACCTCACCCGAACCCGAGAACCAAATCAACAACAACAATAACAAGAAGAAGAAGCTTCGCAAGAGGAAAAGATCTCGTAAATTGGAACAGGAAGTTGAAAAAGAACAACAGGAGGAGAATATTGAAAACGCTGAATCTGAAGAAGAGAAGAATGAAGAAGAACACGGAGATGACGGCGGCAAAGAAGAAGAAGAAGAGAAGAAAGTTGAGAACATTGTTCCGTCTGGAATTATGAGTACTGAGACTTTTTCGTCGTTGGGGTTATCTGAAAAAACTTCTATGGCTCTTGCTGATATGACTTTTACCCATATGACTCAGATTCAAGCGAAAGCTATTCCGCCGCTATTGATGGGAAAGGATGTTCTTGGTGCTGCAAGGACAGGTGCTGGAAAAACACTTGCATTTTTAGTTCCAGCTGTGGAATTGTTGTACAATGTGCAGTTCACGCCTCGTAATGGAACTGGTGTTATTGTCATTTGTCCAACTAGAGAACTTGCCATTCAGACACATGCTGTGGCGATGGAACTCCTACGCAAGCATCATTCGCAAACTTTTGGATTTGTTATTGGTGGTTCGGGTAGAAAGGGAGAAGCTGAACGCATTGTTAAAGGAGTAAATCTGTTGGTTGCAACGCCTGGTCGTCTTCTTGACCACCTTCAGAATACAAAAGGATTCATATATAAAAACTTGAAGTGTCTCATCATTGATGAAGCAGACAGGATATTGGAATCCAACTTTGAGGAGGAAATGAAGCAGATCCTTAACATACTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCAGCCACACAAACAAAGAAGGTTGAGGATCTTGCTCGCTTGTCTTTTCAGACACCTCCTGTCTATGTTGATGTAGATGATGGGAGAAAAAAGGTCACTGTTGAAGGATTGGAACAGGGCTATGTTGTTGTTCCTTGTGCCAAGCGTTTTGTTGTTCTGTATTCATTCTTGAAGAGATACCAATCAAAAAAAGTGATGGTGTTTTTATCTTCATGCAACTCTGTCAAATTCCATGCCGATCTTCTTAAGTTCATTGGATTAGACTGTTTAAATATTCATGGAAAACAAAAGCAGAATTCCCGGACAACTACCTTCTTCAACTTTTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGAGGACTTGACATCCCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCACAGAGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTACTTGAAGGCAGCAAAGGTTCCCGTGAAAGAGTATGCATTTGATGATAAAAAGCTTGCAAATGTACAATCTCATCTGGAGAAGATGGTGGGCAGCATTTATCATTTGAACACTATGGCTAAAGAGGCTTATAGGTCATATATACTGGCATATAATGCACATTCTATGAAGGAAATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTACTTCATTCTGTTTTACAAACCCACCGAAGATAAGTCTGAATATAGACAGCAGTGCTTCGAAGCATAGGAAGAAAATTCGCAAAGTGGAAGGAAGAAGAAATTGA 1671 0.4099 MADSDHDRHTSPEPENQINNNNNKKKKLRKRKRSRKLEQEVEKEQQEENIENAESEEEKNEEEHGDDGGKEEEEEKKVENIVPSGIMSTETFSSLGLSEKTSMALADMTFTHMTQIQAKAIPPLLMGKDVLGAARTGAGKTLAFLVPAVELLYNVQFTPRNGTGVIVICPTRELAIQTHAVAMELLRKHHSQTFGFVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLIIDEADRILESNFEEEMKQILNILPKKRQTALFSATQTKKVEDLARLSFQTPPVYVDVDDGRKKVTVEGLEQGYVVVPCAKRFVVLYSFLKRYQSKKVMVFLSSCNSVKFHADLLKFIGLDCLNIHGKQKQNSRTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAFDDKKLANVQSHLEKMVGSIYHLNTMAKEAYRSYILAYNAHSMKEIFNVHRLDLQAVATSFCFTNPPKISLNIDSSASKHRKKIRKVEGRRN* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2322 556 Gene3D - 310 551 IPR027417 -
Mal4g2322 556 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 471 IPR001650 -
Mal4g2322 556 Coils Coil 27 63 - -
Mal4g2322 556 Gene3D - 7 301 IPR027417 -
Mal4g2322 556 SMART DUF4217_3 472 535 IPR025313 -
Mal4g2322 556 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 40 537 - -
Mal4g2322 556 Pfam Domain of unknown function (DUF4217) 473 533 IPR025313 -
Mal4g2322 556 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 297 IPR014001 -
Mal4g2322 556 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 243 251 IPR000629 -
Mal4g2322 556 Pfam DEAD/DEAH box helicase 114 286 IPR011545 GO:0003676|GO:0005524
Mal4g2322 556 CDD DEADc_DDX18 101 299 IPR044773 GO:0003724|GO:0005524
Mal4g2322 556 SMART ultradead3 109 315 IPR014001 -
Mal4g2322 556 PANTHER RNA HELICASE 40 537 - -
Mal4g2322 556 MobiDBLite consensus disorder prediction 1 85 - -
Mal4g2322 556 MobiDBLite consensus disorder prediction 63 80 - -
Mal4g2322 556 CDD SF2_C_DEAD 312 442 - -
Mal4g2322 556 Pfam Helicase conserved C-terminal domain 327 431 IPR001650 -
Mal4g2322 556 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 90 118 IPR014014 GO:0003724
Mal4g2322 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 453 IPR027417 -
Mal4g2322 556 SMART helicmild6 351 432 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2322 Mal-Chr4 57628698 57634617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2322 85 451 Eukaryotic Initiation Factors Gene Family AT3G19760 27.446 1.97e-43 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2322 K13179 - gmx:100798290 860.907