Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2307 ATGTCTCCTCTGCAACCCAGTCGTGTTGATCCAAAAATCTGGCAGTGCTGCGCCGGAGCTTCTGTCAAAATCCCAAAATTACATTCACAAGTTTATTACTTCCCATTAGGTCACTTAGAACATGTCTGTCCATCTCCAAACCCTAACACACTCTCCCTTCTCAATCGTTCCCGTCCAGTCATTCCATGCTACATCTCCGCCGTTGGTTTACTCGCTGACCCTCCTACCGACGAAGTCTTCGTCAAATTACTCCTCACTCCAGTCACTAAGGACAGTGTTCACGAACCTCAGGAGGTTCATGAACACCAAGATGACGGCAATGAGGTTGTTTTCTCTGCCAAGACTCTCACCCAATCTGATGCCAACAATGGCGGTGCATTCTCCGTACCACGGGAATGCGCAAAATTAATCTTCCCGCCGCTTGACCTAACAACCGAAAAGCCGTCTCAAGAACTCTCCATCACTGACATTCATGGCGAAGTCTGGAAGCTTCGCCATGTCTACCGTGGAACTCCCTTGCGACACCTGATCACCACCGGCTGGAGTAAGTTCGTTGACAAGAAGAAATTCGTCAGCGGCGATTCCTTAGTTTTCATGAAAACTTCAGAAGGAAGTATCTTTGTTGGATTCCGCTGGCATAAGTCTGGTGCTGCCGCTAAAATAACGAAAAAATCGTTTACGGAGGCAGTAGAATTGGCGGAGAAGAACATGGCTTTTGAAGTTATGTATTATCCGAGAGCTGAAGGTTGGTGTAATTTTGTGGTAGATGCTAAGCTTGTGGAGGATGCAGTGAAGATCAATTGGAATCCTGGAATGAGAATTAAGCTTTCTTTCAATAATGACGATTCTTCAAAGAGATGCTCACCTTTTCATGGGACAATATCTGCTCTCTCTGCTCCTACTCGTCCATGGCGCATGCTTCAGGTATCTACATGTTCTCTTCTTTTGGTCTTATTGTATTTCAACTACATAATGGTTAAAAAAATGTAG 990 0.4525 MSPLQPSRVDPKIWQCCAGASVKIPKLHSQVYYFPLGHLEHVCPSPNPNTLSLLNRSRPVIPCYISAVGLLADPPTDEVFVKLLLTPVTKDSVHEPQEVHEHQDDGNEVVFSAKTLTQSDANNGGAFSVPRECAKLIFPPLDLTTEKPSQELSITDIHGEVWKLRHVYRGTPLRHLITTGWSKFVDKKKFVSGDSLVFMKTSEGSIFVGFRWHKSGAAAKITKKSFTEAVELAEKNMAFEVMYYPRAEGWCNFVVDAKLVEDAVKINWNPGMRIKLSFNNDDSSKRCSPFHGTISALSAPTRPWRMLQVSTCSLLLVLLYFNYIMVKKM* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2307 329 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 220 310 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal4g2307 329 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 213 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal4g2307 329 SUPERFAMILY DNA-binding pseudobarrel domain 109 212 IPR015300 -
Mal4g2307 329 SMART B3_2 112 214 IPR003340 GO:0003677
Mal4g2307 329 CDD B3_DNA 114 208 IPR003340 GO:0003677
Mal4g2307 329 Pfam Auxin response factor 229 308 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mal4g2307 329 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Mal4g2307 329 Pfam B3 DNA binding domain 114 211 IPR003340 GO:0003677
Mal4g2307 329 PANTHER AUXIN RESPONSE FACTOR 220 310 - -
Mal4g2307 329 PANTHER AUXIN RESPONSE FACTOR 5 213 - -
Mal4g2307 329 Gene3D - 110 212 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2307 Mal-Chr4 56735330 56736319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2307 8 305 B3 DNA Binding Superfamily AT1G77850 43.860 4.95e-91 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal4g2307 B3 4.9e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2307 - - mtr:MTR_5g040740 469.159