Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2270 ATGGGGAGGGGAAGGGTGCAATTGAAGAGGATCGAGAACAAGATTAATAGGCAAGTGACTTTTTCAAAGAGAAGAAATGGTTTATTCAAGAAAGCTCATGAGATCTCTGTGCTTTGTGATGCTGAAGTTGCTCTTATAGTCTTCTCCAACAAAGGAAAGCTCTATGAGTATTCAAGTGACCCATGTATGGAAAAGATTCTAGAACGGTATGAAAGATATTCATATGCGGAGAGACAACATGTTACAAATGATCAGCCACAAAATGAAAATTGGATTTTAGAACATGCAAAGCTAAAGGCAAGGTTGGAAGTCATACAGAAAAATCAAAGGAATTTTATGGGTGAAGAACTTGATGGCTTAAGTATGAAAGAGCTTCAGCATTTGGAGCATCAACTTGATTCTGCTCTCAAACAGATTAGATCACGAAAGAATACTTTGATGTATGAATCCATTTCAGAGCTCAATAAAAAGGATAAAGCCCTCCAAGAAAAAAACAACCTGCTCACAAAAAAGATAAAGGAGAAAGAAAAGGCACTGGCCCAACTTGAGCAGCAAACTAAGGATATGAATCTAGCCTCCCCCGTCCTTGTACCTCAGTCATTGGAGACATTGAAGATTAGAGGTTACCCTGAAGATAGAGATGATGGAGGAGATAATGAAGGAAGTCAAACCCGAGCCAACGCCCCTCTTCCACCTTGGATGCTTAATTCATCCTAA 717 0.3947 MGRGRVQLKRIENKINRQVTFSKRRNGLFKKAHEISVLCDAEVALIVFSNKGKLYEYSSDPCMEKILERYERYSYAERQHVTNDQPQNENWILEHAKLKARLEVIQKNQRNFMGEELDGLSMKELQHLEHQLDSALKQIRSRKNTLMYESISELNKKDKALQEKNNLLTKKIKEKEKALAQLEQQTKDMNLASPVLVPQSLETLKIRGYPEDRDDGGDNEGSQTRANAPLPPWMLNSS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2270 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal4g2270 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal4g2270 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal4g2270 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal4g2270 238 MobiDBLite consensus disorder prediction 206 220 - -
Mal4g2270 238 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Mal4g2270 238 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal4g2270 238 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Mal4g2270 238 Coils Coil 88 108 - -
Mal4g2270 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal4g2270 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Mal4g2270 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mal4g2270 238 MobiDBLite consensus disorder prediction 221 238 - -
Mal4g2270 238 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Mal4g2270 238 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal4g2270 238 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 221 - -
Mal4g2270 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal4g2270 238 MobiDBLite consensus disorder prediction 203 238 - -
Mal4g2270 238 Coils Coil 151 192 - -
Mal4g2270 238 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2270 Mal-Chr4 54926234 54947543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2270 1 190 MADS-box Gene Family AT1G26310 63.542 3.02e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal4g2270 K-box 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2270 K09264 - gmx:100816836 352.829