Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2236 ATGGAGCTTGGTTTAACCTTAGGAGACTCTCCAAAACCTCTACTTGGGTTAATGGAAAAGCATCCTCATGAAACTTCTAAAGAACATGGCTTAGGCTTCAACACCACTTTATCAATTGGTCCAATCACAACTACACAAAGAGATCAACTTCAACCACATCAACAAGAAGAAAAGACACAAAGAGACATCATCAACAACAACAACAATAGTGACAAAACTGAAAATCCCAACCCTATATTGCATCAACTTGATCTTCTTCCTCAACTTTCATTCCCATGGCATCCTCCTTCTCAAAACGGAAATTTACTATTATCAACCGAGTTTGGAGGTTCTTCAAGGGGATTGGATGTGAACGTGGTTCCACCTGTGGTTGTTATGGCGGACGATGAGACGGCGCTTTCATCGTCACCTAACAGCGTAGCATCTTCTTTTCAGATGGATCTATGTATGTATAGTCGAGGAGGAAGTGGTGGTGGTGGTGGAAGTTTGAGTGGCTCTGGAGGGAACAAGAGAGAGTTTTCTGATGGTGAAGGTTATGATCAAAGGAATTCTTCAAGAGTTAGTGATGAAGATGATAACTGTGGTGTTGGTAACACAAGAAAGAAACTTAGGCTCTCTAAGGATCAATCTGCTTTTCTTGAAGAAAGCTTCAAAGAACATCACACTCTTAACCCCAAACAAAAACTTGCTCTTGCAAAACAACTCAATCTTCGTCCTCGCCAAGTAGAAGTTTGGTTCCAAAACAGAAGAGCAAGGACTAAGTTGAAGCAAACAGAAGTAGACTGTGAATATTTAAAGAGATGCTGTGAAACACTAACAGAAGAGAATAGGAGATTACACAAGGAACTTCAAGAATTAAGAGCTTTAAAAACTTCAAATCCATTCAACATGCAATTACCAGCAACTACTTTAACTATGTGCCCTTCTTGTGAGCGTGTTGCAACAAATTCTACAGCCACTTCCTCTATCACTAATACAAGTGCCACAATCAATGCTAATAACAACAATAACAAAACCAGTGATGATTCCACCTCAAAAACCAACATTGGATTGCCTTTTGGAAAACCAAGGTTTCAAACACAAAGTTGA 1089 0.3958 MELGLTLGDSPKPLLGLMEKHPHETSKEHGLGFNTTLSIGPITTTQRDQLQPHQQEEKTQRDIINNNNNSDKTENPNPILHQLDLLPQLSFPWHPPSQNGNLLLSTEFGGSSRGLDVNVVPPVVVMADDETALSSSPNSVASSFQMDLCMYSRGGSGGGGGSLSGSGGNKREFSDGEGYDQRNSSRVSDEDDNCGVGNTRKKLRLSKDQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFNMQLPATTLTMCPSCERVATNSTATSSITNTSATINANNNNNKTSDDSTSKTNIGLPFGKPRFQTQS* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2236 362 Pfam Homeobox associated leucine zipper 256 290 IPR003106 GO:0006355|GO:0043565
Mal4g2236 362 Pfam Homeodomain 200 254 IPR001356 GO:0003677
Mal4g2236 362 ProSiteProfiles 'Homeobox' domain profile. 196 256 IPR001356 GO:0003677
Mal4g2236 362 MobiDBLite consensus disorder prediction 173 200 - -
Mal4g2236 362 ProSitePatterns 'Homeobox' domain signature. 231 254 IPR017970 GO:0000981|GO:0006355
Mal4g2236 362 SUPERFAMILY Homeodomain-like 190 257 IPR009057 -
Mal4g2236 362 Coils Coil 269 292 - -
Mal4g2236 362 PANTHER - 1 344 - -
Mal4g2236 362 MobiDBLite consensus disorder prediction 156 200 - -
Mal4g2236 362 MobiDBLite consensus disorder prediction 46 77 - -
Mal4g2236 362 CDD homeodomain 200 257 IPR001356 GO:0003677
Mal4g2236 362 SMART halz 256 299 IPR003106 GO:0006355|GO:0043565
Mal4g2236 362 MobiDBLite consensus disorder prediction 328 362 - -
Mal4g2236 362 Pfam HD-ZIP protein N terminus 27 144 IPR006712 GO:0005634
Mal4g2236 362 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 344 - -
Mal4g2236 362 MobiDBLite consensus disorder prediction 61 77 - -
Mal4g2236 362 Gene3D - 204 254 - -
Mal4g2236 362 SMART HOX_1 198 260 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2236 Mal-Chr4 53897853 53899836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2236 113 331 Homeobox Transcription Factor Family AT5G47370 57.273 9.89e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal4g2236 HD-ZIP_N 2.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2236 K09338 - gmx:100805312 430.254