Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2208 ATGACGACGGCGATAACGGTGGCGGAACCCGAACTTAAAACATACTGGTGCCACGAATGCGACATGAGTGTCTCTCTAACTACTTCTCACACCCCCTCTCCTCTACTATGCCCCCATTGCGATACACATTTTCTTGAACTCATGGATTCACCTTTCTCCCAAAACGACGCCGATTCATCATCCATCTTCGACGTTGTTTTCCAAGACGCGCTTTTACTACTCACTCCTCCTCCTCCTAAACCACACACCTCACCAATCCTTCCTACAATAACCGTCACACAAACGCTTCTTACCGTACTGGATCCCTCAAACGGCGTCGTTTTATGCGCCGTTTGTAAAGAAACGGTTTCCGTTGATGAAGAAGCGAAACAGCTTCCGTGTGATCATCTTTATCATGTGGATTGTATTACTCCGTGGCTTCGTATTCGTTCTTCTTGTCCTCTTTGTCGGTGCCAAATTGAGGAGGATGAAGAGGTTGAGAATGATGAGGAAGATGATGTTAATGGTGGTGATTTGATGAGGGAGATGGTGATGCGGTTGTCGGAGTTGTCCGAGGATGATTTTTATGGATTGAGGATTACTCTTAATCACATTGCTTCTCGTCATGCTCTGCTTCATTCAAATGATTCCGGTGGTGGTGAGAATCGCGGTGATGCTAGTGAACTTGGTGGCGGTGGAGTAGATGGAGAGGAATCTTGA 699 0.4664 MTTAITVAEPELKTYWCHECDMSVSLTTSHTPSPLLCPHCDTHFLELMDSPFSQNDADSSSIFDVVFQDALLLLTPPPPKPHTSPILPTITVTQTLLTVLDPSNGVVLCAVCKETVSVDEEAKQLPCDHLYHVDCITPWLRIRSSCPLCRCQIEEDEEVENDEEDDVNGGDLMREMVMRLSELSEDDFYGLRITLNHIASRHALLHSNDSGGGENRGDASELGGGGVDGEES* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2208 232 Pfam zinc-ribbon 14 48 IPR039525 GO:0061630
Mal4g2208 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 13 207 - -
Mal4g2208 232 ProSiteProfiles Zinc finger RING-type profile. 109 150 IPR001841 -
Mal4g2208 232 SMART ring_2 109 149 IPR001841 -
Mal4g2208 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 168 IPR013083 -
Mal4g2208 232 Pfam Ring finger domain 109 150 IPR001841 -
Mal4g2208 232 SUPERFAMILY RING/U-box 105 156 - -
Mal4g2208 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 13 207 - -
Mal4g2208 232 MobiDBLite consensus disorder prediction 207 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2208 Mal-Chr4 52906488 52907186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2208 1 153 C3H Transcription Factor Family AT2G44330 30.719 3.85e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2208 K11982 - gmx:100775530 231.106