Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2138 ATGGAGCAACCAGAACACCAAGTAGATGAAAACTTCCCACTCTTCAAACCATCTCAAAAACCCTCCATAAACCCTTCTTCACTCCTCAGTAAACCTACATCCAACCCCAAAACCCCTCGAAACGACGTCGTTACCCACGAAAACCCTAATTCCACCCCCAAAAACACCGCCACCCCCTCATTCTCCGATCTTGGCCTCTCCGAATGGGCGGTAAAAACCTGCAACGAACTCGGAATGCGAACTCCACGGCGCGTGCAACAACACTGCATCTCTAAGATTCTAGAAGGCCGTCATGTAATCGGAATTGATGAGACCGGAAGCGGTAAAACGGCGGCGTTTGCGCTTCCGATTCTCCAGCGGCTTGCTGAGCATACGTTTGGTGTGTTTGCGCTTGTGGTGACGCCCACGCGCGAGCTTGCGTTTCAGTTGGCGGAGCAGTTTAGAGCTCTTGGTTCGTCGCTTCGGCCTCGGATTGCGGTGGTTGTTGGTGGTATGGATATGCTTACACAGACGAAAGAGTTGGTTGCTAGGCCGCATCTTGTTATTGCTACTCCGGGGAGGATTAAGGTTTTGCTGAAGGATAATCCTGAAATTGCTCCTGTTTTTGCTAGGGCTAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTCTTGGATGTTGGGTTTCAGGATGAATTGAAATTTATCTTTCAGTGCTTACCAGAAAACCGACAAAACCTATTCTTCTCTGCAACCACAACTAGTAATCTGCAAAAGTTGCGTGACCGTTATCAAGATAAGTTGTATGCCTTTGAGGCCTATGAAGGGTTTAAGACCGTTGAAAAGCTTACTCAACAAGTTATATTCATCCCTAAAAAGGTGAAGGATGTATATTTGTTGTATATCTTGTCTAAAATGAAAGATATGGGCATTCGGTCTGCCATTGTCTTTGTCTCCACATGCAGAGATTGTCATCGTTTAAATTTAATGCTGGAAGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATTCAGATCACAGGCTCAGAGGCTTGAAGCACTTCATGACTTTAAATCAGGAAAGGTTCCTGTATTACTAGCAACTGATGTTGCTGGCCGTGGTCTGGATATTCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGATTATATCCACCGCGTTGGTCGTACTGCAAGAGCAGGTAGAGGGGGACTCGCTTTGAGCCTTGTCACTCAGAATGATGTTGATCTCATTCGTGAAATAGAGGCCCTTATTGGAAGGCAACTTGAAATGATTGAATACAAAGAAAATGAGGTGCTTTCTCTCATGAAAAAGGTTTTCAGTGCAAAGAATGTAGCAAAAATGAAGATGATGGATGATGGATTTGAAGAGAAAGCAAATGAGCGGAAAAAACAGAAACTGAAAATGCTAGAAGAGAAGGGATTATTAAAGCAAAGAAGCAAGAGAAAAAGAAATAAAGAATTCGCAAAGAAAGGAAATAAACATGAAAAAGTGGATGGGAATGCATTAGCAGATACATCATCACTTAGGAAAAGGCGTAAGAAGAGAGAGTAA 1566 0.4361 MEQPEHQVDENFPLFKPSQKPSINPSSLLSKPTSNPKTPRNDVVTHENPNSTPKNTATPSFSDLGLSEWAVKTCNELGMRTPRRVQQHCISKILEGRHVIGIDETGSGKTAAFALPILQRLAEHTFGVFALVVTPTRELAFQLAEQFRALGSSLRPRIAVVVGGMDMLTQTKELVARPHLVIATPGRIKVLLKDNPEIAPVFARAKFLVLDEADRVLDVGFQDELKFIFQCLPENRQNLFFSATTTSNLQKLRDRYQDKLYAFEAYEGFKTVEKLTQQVIFIPKKVKDVYLLYILSKMKDMGIRSAIVFVSTCRDCHRLNLMLEVLDQEAAALYSFRSQAQRLEALHDFKSGKVPVLLATDVAGRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIREIEALIGRQLEMIEYKENEVLSLMKKVFSAKNVAKMKMMDDGFEEKANERKKQKLKMLEEKGLLKQRSKRKRNKEFAKKGNKHEKVDGNALADTSSLRKRRKKRE* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2138 521 MobiDBLite consensus disorder prediction 495 514 - -
Mal4g2138 521 Gene3D - 270 515 IPR027417 -
Mal4g2138 521 CDD SF2_C_DEAD 275 407 - -
Mal4g2138 521 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 437 IPR001650 -
Mal4g2138 521 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 59 87 IPR014014 GO:0003724
Mal4g2138 521 Pfam DEAD/DEAH box helicase 84 252 IPR011545 GO:0003676|GO:0005524
Mal4g2138 521 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 209 217 IPR000629 -
Mal4g2138 521 MobiDBLite consensus disorder prediction 461 521 - -
Mal4g2138 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 418 IPR027417 -
Mal4g2138 521 MobiDBLite consensus disorder prediction 1 60 - -
Mal4g2138 521 MobiDBLite consensus disorder prediction 461 482 - -
Mal4g2138 521 PANTHER RNA HELICASE 59 489 - -
Mal4g2138 521 SMART ultradead3 78 278 IPR014001 -
Mal4g2138 521 Gene3D - 30 262 IPR027417 -
Mal4g2138 521 MobiDBLite consensus disorder prediction 17 60 - -
Mal4g2138 521 Pfam Helicase conserved C-terminal domain 291 398 IPR001650 -
Mal4g2138 521 SMART helicmild6 317 398 IPR001650 -
Mal4g2138 521 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 90 263 IPR014001 -
Mal4g2138 521 CDD DEADc_DDX49 61 264 - -
Mal4g2138 521 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 59 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2138 Mal-Chr4 48719256 48724243 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2138 41 411 Eukaryotic Initiation Factors Gene Family AT3G13920 33.155 5.17e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2138 K14778 - gmx:100804060 740.725