Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2080 ATGCAAACTTTGGTTTCAGCAAAGTTTCTTTTACTTGTGGGAGAATCATTTCCTATGAGAAGGGCTTTATTGAATTCTAGATTTGCTTGGTTTCATAGTAGTTTGAAATGTATGAACAAACATGATTCTTTGACCCTTTCAAGCGTTGGTTTTGAAAGGGAAATTGAACCTAAGATTACAAGTGAAGAGAATAAGGTTAAGCCATTAGGGTCATCTTCTTCTGAGGGTTTCAAGGTTAAAAGAAAACCCTTTGGAGTTAGTGAGAAGAAAAGTGTTAGGGTTAAAGAGAGAAAAGAAATAGAGAATGCCCCTTTTGCTGCTAAGTCGTTTTCGGAACTCGGTATTCCGGAAGTGTTAATTGAGAGATTAGGAAAAGAGGGTTTTAATGTTCCAACTGAGGTTCAATCTGCTGCGGTGCCTACCATTTTGAAGAATAGGGATGTAATAATTCAGTCGTATACGGGTTCGGGGAAAACATTGGCTTATCTACTTCCTATTTTATCTGTTATTGGGCCGTTGAGAGGCGAAAATCGTGAAGGGGGTGGTGATGGTGGTGAAGCAGGGAAGAAATTGGGAGTTGAGGCGGTGATTGTTGCTCCTTCTAGGGAGCTTGGAATGCAGATAGTTAGGGAGTTTGAGAAGATATTGGGAATGGATAACAGGAAAGTGGTTCAGCAGCTTGTGGGAGGTGCGAACCGAACCAGGCAGGAAGAAGCTCTTAAGAAAAACAAACCTGCTATTGTTGTTGGTACGCCCGGTAGGATAGCCGAGCTTAGTGCAAGTGGAAAACTTCGTACTCACGGTTGCCAATATTTAGTATTAGATGAAGTTGATGAGCTCCTGTCGTTCAATTTCCGGGAAGACATGCACAGGTTATTGGAGCATGTTGGGAGAAGATCGGGTGCAGACCATAACTCAAATGCTAAAAAAACCGAGCGTCAGTTAATTATGGTTTCTGCAACTGTGCCGTTTTCGGTTGTAAGGGCAGCTAAAAGCTGGGGTTCTGACCCACTTCTTGTTCAAGCTAAGAAAATTGTACCGCTAGAAACTTTGTCCCCTGAGCCGGTCAATTTGGCACCGAGCTCGAGTTCTACCGCGTCTGTGCCATCTAAGGCAGTAGTAGAGAGTCTACCTCCAGCATTGAAACACTATTACTGTGTGGTAAGGTTGCAGCACAAAGTTGATACATTGAGAAGGTGTATTCATGCCCTGGATGCAAAATTTGTGATAGTTTTCATGAATCATACTAAGCAGTTAAAGGATGTTGTTTTCAAGCTTGAAGCCCGTGGGGTGAAAGCCGCAGAGTTACACGGTGATCTTGGGAAGCTTGGTAGGTCGACAACCATGAAAAAGTTCAAGAACGGTGAGGTTAGAGTTCTTGTGACAAATGAATTATCAGCAAGAGGTTTGGATGTGGCAGAATGTGATCTTGTGGTAAACCTGGACTTACCAACAGATTCAATTCACTATGCACACCGAGCTGGTCGAACTGGCCGGCTTGGTAGGAATGGTACAGTGGTAACTATATGTGAAGAGTCAGAGGTCTTTGTTGTGAGAAAATTGAAGAAGCAACTTGAAATACCGATAGCGTGCTGTAATTTTGTCGAGGGAAAGCTTCTTATCACTGAAGAAGAAGAGAATGCAGTAAGCAGCACTTCTTGA 1662 0.4284 MQTLVSAKFLLLVGESFPMRRALLNSRFAWFHSSLKCMNKHDSLTLSSVGFEREIEPKITSEENKVKPLGSSSSEGFKVKRKPFGVSEKKSVRVKERKEIENAPFAAKSFSELGIPEVLIERLGKEGFNVPTEVQSAAVPTILKNRDVIIQSYTGSGKTLAYLLPILSVIGPLRGENREGGGDGGEAGKKLGVEAVIVAPSRELGMQIVREFEKILGMDNRKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCQYLVLDEVDELLSFNFREDMHRLLEHVGRRSGADHNSNAKKTERQLIMVSATVPFSVVRAAKSWGSDPLLVQAKKIVPLETLSPEPVNLAPSSSSTASVPSKAVVESLPPALKHYYCVVRLQHKVDTLRRCIHALDAKFVIVFMNHTKQLKDVVFKLEARGVKAAELHGDLGKLGRSTTMKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVVTICEESEVFVVRKLKKQLEIPIACCNFVEGKLLITEEEENAVSSTS* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2080 553 Gene3D - 78 342 IPR027417 -
Mal4g2080 553 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 10 529 - -
Mal4g2080 553 CDD DEADc 119 341 - -
Mal4g2080 553 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 108 136 IPR014014 GO:0003724
Mal4g2080 553 SMART ultradead3 127 359 IPR014001 -
Mal4g2080 553 Pfam Helicase conserved C-terminal domain 396 501 IPR001650 -
Mal4g2080 553 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 340 IPR014001 -
Mal4g2080 553 Pfam DEAD/DEAH box helicase 132 326 IPR011545 GO:0003676|GO:0005524
Mal4g2080 553 CDD SF2_C_DEAD 381 510 - -
Mal4g2080 553 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 522 IPR027417 -
Mal4g2080 553 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 540 IPR001650 -
Mal4g2080 553 SMART helicmild6 420 501 IPR001650 -
Mal4g2080 553 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 10 529 - -
Mal4g2080 553 Gene3D - 378 534 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2080 Mal-Chr4 46548550 46550211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2080 109 535 Eukaryotic Initiation Factors Gene Family AT3G19760 25.866 6.81e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2080 - - gmx:100812968 835.484