Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal4g2059 | ATGGGAAACCTCTTAGGTAAAAGTAAAAAGCGTGAGCCTCAAAATTCTAGTAGTGATAAAGGTGGAAGAATCTCATCCAAATTTCCAATTCATGAACCTATTTCACTATCACTTCCACAAGCTATCATGCCTAAGAAATCAAGTTCTGGGACACATAATTCTGGACAAAGTTCAAACACCAAGAAATCTCCCAAGAAGTATGCTTTGATTCAAGATAACTTCACATCTCTTGAACAGGTTACTGCGGCCCTAAGGAAAGAAGGTTTAGAGTCATCAAATCTCATCCTTGGAATTGATTTCACAAAGAGTAATGAATGGACTGGCCAAATATCATTCAATAAGAGAAGCCTACATGCAATTGGAGATACACCAAACCCCTATGAGAAGGCCATATCAATTGTTGGCAAGACTTTGGCTCCCTTTGATGAAGACAATTTGATTCCATGCTTTGGCTTTGGTGATGCTACCACCCATGATCAAGAAGTATTCAGCTTTCATAGTGATCATTCACCTTGCCATGGATTTGAAGAAGTTTTGGCTTGCTACAAAAAAATAGTTCCAAACTTGAAACTCTCAGGACCAACTTCTTATGGACCGGTGATTGAGGCTGCGATAGACATAGTCGAGAAAAGTCATGGCCAATTCCATGTGTTGGTTATCATTGCAGATGGCCAGGTTACAAGAAGTGTAAACTATGAAGATGATGAACTCAGTCCTCAAGAAGAGAAAACAATCAAAGCAATTGCTGATGCAAGTAAATATCCACTTGCTATAGTTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGACATGGAAAAGTTTGATGACAAAATTCCAACACGCGATTTTGACAATTTTCAGTTTGTTAATTTCACCAAAATTATGTCTAAAAACACAAGCCCAAGTGAAAAAGAAGCGGCTTTTGCTCTGGCTGCTCTCATGGAGATCCCTTTCCAATATAAAGCATGTGTCGAATTTCGAAAACTCGGACGTGTAACTGGCAGAGCAAAGAGAATAGTTCCAAAACCATCTCCTGTTCCTTTTTCTCGGCCTGCTCCAAGCAATTCGCCGGCATCAACAACAGATGAACAAAATCAATCTGTCTGCCCTGTTTGTCTGACCAATGCAAGGGATTTGGCGTTTGGATGTGGCCACATGACTTGCAGAGATTGTGGATCAAGGTTAAGAGATTGTCCTATATGTCGAGTGAGGATCACTAGTCGTCTTAGAGTTTACAACGGGTGA | 1245 | 0.4056 | MGNLLGKSKKREPQNSSSDKGGRISSKFPIHEPISLSLPQAIMPKKSSSGTHNSGQSSNTKKSPKKYALIQDNFTSLEQVTAALRKEGLESSNLILGIDFTKSNEWTGQISFNKRSLHAIGDTPNPYEKAISIVGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHSDHSPCHGFEEVLACYKKIVPNLKLSGPTSYGPVIEAAIDIVEKSHGQFHVLVIIADGQVTRSVNYEDDELSPQEEKTIKAIADASKYPLAIVLVGVGDGPWEDMEKFDDKIPTRDFDNFQFVNFTKIMSKNTSPSEKEAAFALAALMEIPFQYKACVEFRKLGRVTGRAKRIVPKPSPVPFSRPAPSNSPASTTDEQNQSVCPVCLTNARDLAFGCGHMTCRDCGSRLRDCPICRVRITSRLRVYNG* | 415 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal4g2059 | 414 | SUPERFAMILY | RING/U-box | 363 | 408 | - | - | |
| Mal4g2059 | 414 | MobiDBLite | consensus disorder prediction | 41 | 65 | - | - | |
| Mal4g2059 | 414 | ProSiteProfiles | Zinc finger RING-type profile. | 369 | 402 | IPR001841 | - | |
| Mal4g2059 | 414 | Pfam | Copine | 116 | 330 | IPR010734 | - | |
| Mal4g2059 | 414 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
| Mal4g2059 | 414 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 352 | 413 | IPR013083 | - | |
| Mal4g2059 | 414 | SMART | VWA_4 | 91 | 294 | IPR002035 | - | |
| Mal4g2059 | 414 | Pfam | Zinc finger, C3HC4 type (RING finger) | 366 | 407 | - | - | |
| Mal4g2059 | 414 | MobiDBLite | consensus disorder prediction | 340 | 364 | - | - | |
| Mal4g2059 | 414 | PANTHER | UBIQUITIN-PROTEIN LIGASE RGLG2-LIKE PROTEIN, PUTATIVE-RELATED | 1 | 413 | - | - | |
| Mal4g2059 | 414 | SMART | ring_2 | 369 | 401 | IPR001841 | - | |
| Mal4g2059 | 414 | CDD | RING-HC_RGLG_plant | 368 | 412 | IPR045317 | GO:0061630|GO:0070534 | |
| Mal4g2059 | 414 | SUPERFAMILY | vWA-like | 92 | 275 | IPR036465 | - | |
| Mal4g2059 | 414 | PANTHER | COPINE FAMILY PROTEIN 1 | 1 | 413 | - | - | |
| Mal4g2059 | 414 | Gene3D | von Willebrand factor, type A domain | 93 | 304 | IPR036465 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal4g2059 | Mal-Chr4 | 45637032 | 45642010 | Proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal4g2059 | K16280 | - | gmx:100790153 | 647.506 |
Event-related genes