Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2048 ATGGCTCCAATGACTCTACCACCTGGATTCAGGTTCCATCCTACAGATGAAGAGCTTGTTGCTTACTACTTAGAAAGAAAAATAACAGGTAGAACTATAGAGCTTGATATCATTGCAGAAGTTGATCTCTACAAATGTGAACCTTGGGATTTACCAGAAAAATCATTTCTTCCAAGCAAGGATATGGAGTGGTATTTTTATAGTCCAAGAGACAGAAAGTATCCAAATGGGTCAAGAACTAATAGAGCAACAAGAGGTGGTTATTGGAAAGCAACTGGAAAAGATAGGGCAGTGAATTCACAAAAGAAACAAGTTGGAATGAAGAAGACACTTGTTTATTACAAAGGTAGAGCACCTCATGGGATTAGAACCAATTGGGTTATGCATGAATATCGTCTTATTGAATCTCATCCTGGTGCTTCTCTCTCATCTTTGAAGGACTCCTATTCATTGTGTCGAATATTTAAGAAGACAATTCAAATTCCAGCAAAAACGAATGAAGAAGAACAAGTTGAGGATACAAAGAAGGAAATGATTTTAGTCTTAGAAGAACAAGTGCAAGGGGAATACTCAAGTGACACTGAGATTTCAAGAGAAATGGAAACTATGGATGAGAAAGTTCTTAATCATGAAAATCCTAAATTTCCATGTGATGCTTCTTCTTCTGATGTCACTCAAGGAACATGTACACCAACAAATACATGTAATAATAATATAGCAGATGATTTTCATGCACAATTTGCTTGTGATGAAGCAACTAGTTCAGCTATTTCTTATCCAATGGGAATAGGCTACCCCTCAAACTTATTTCAGGATATAGAAATACCTATGTATGGTGGCTTCCAAAATCAATTCCCACAAACACCTTTTATGATGGAAGATTTCCCACAAATGGAGACAAAATCAATAATGAAGCTTGATATGACTGATGACTGCTTTTTGTATGACAAATACAAAGACTGTATGAATGGAACCCTAGAAGAAATCATCTCTTTATGTTCCTCTCAAGATCATTCTGTGGCTTTTCCAATGCTGTAG 1038 0.3622 MAPMTLPPGFRFHPTDEELVAYYLERKITGRTIELDIIAEVDLYKCEPWDLPEKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRAVNSQKKQVGMKKTLVYYKGRAPHGIRTNWVMHEYRLIESHPGASLSSLKDSYSLCRIFKKTIQIPAKTNEEEQVEDTKKEMILVLEEQVQGEYSSDTEISREMETMDEKVLNHENPKFPCDASSSDVTQGTCTPTNTCNNNIADDFHAQFACDEATSSAISYPMGIGYPSNLFQDIEIPMYGGFQNQFPQTPFMMEDFPQMETKSIMKLDMTDDCFLYDKYKDCMNGTLEEIISLCSSQDHSVAFPML* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2048 345 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Mal4g2048 345 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Mal4g2048 345 Coils Coil 164 184 - -
Mal4g2048 345 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Mal4g2048 345 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 199 - -
Mal4g2048 345 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 199 - -
Mal4g2048 345 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2048 Mal-Chr4 45244666 45249145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2048 1 331 NAC Transcription Factor Family AT1G54330 50.733 3.35e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mal4g2048 NAM 4.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2048 - - gmx:100808325 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g2048 4 45244666 45249145 Mal4g2048 4 45244666 45249145 ECH