Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2003 ATGTCAAAAACACTACGATTTGGTGGTGATGTTGCAGGAGAGAACAGAAAGCTAAAGCGAAAGATGGACGATGCTATTGCTCCTGATTTGGAGGTGTCCCTTTCTTTGGGTTTAGGTGGAGGTGGAAGAGGACGATCTTTATTCAAATCCCTCAAGAGCCATGTGGAGCTGAGGGAATACCCATGTAATTTTTGCAACAAGAAGTTTTCAAGTTCACAAGCCTTGGGGGGACACCAAAATGCCCATAGGCGTGAAAGGTTTCTTTCAAGAATGGAGAAAGAAATTCAATTGGGTACTTATGAACTTGGTGCTAATCATTTCTGTCCATACCCAAATCATCATCAATATCCCTTTACAACTGGGTCGTCACCTTTTTATCATGGAATTGGATGGCCTCAATATGTTGCCCCTACAAGCTATGGAAACCCATTTGGGATAATGACCAACCCTAATTGGGCTACTCAAACTCCACTTAACAATAACGTGGGATTTGAAAATTATGAGCTTACTAATCATCTGCAAATTCGATCATTTGGTGTTGTTCTTAATAGTCATGTCCAAATGGAAAATAAAAATCAATATGACCCAAATAGCCAGATAATTTCGCCCTCATTCCATGATTTGTCCCGTAACCTTTAG 639 0.4038 MSKTLRFGGDVAGENRKLKRKMDDAIAPDLEVSLSLGLGGGGRGRSLFKSLKSHVELREYPCNFCNKKFSSSQALGGHQNAHRRERFLSRMEKEIQLGTYELGANHFCPYPNHHQYPFTTGSSPFYHGIGWPQYVAPTSYGNPFGIMTNPNWATQTPLNNNVGFENYELTNHLQIRSFGVVLNSHVQMENKNQYDPNSQIISPSFHDLSRNL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2003 212 Gene3D Classic Zinc Finger 45 104 - -
Mal4g2003 212 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Mal4g2003 212 PANTHER ZINC FINGER PROTEIN JAGGED 1 202 IPR045320 GO:0003700
Mal4g2003 212 Pfam C2H2-type zinc finger 60 85 - -
Mal4g2003 212 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Mal4g2003 212 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Mal4g2003 212 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2003 Mal-Chr4 42571396 42572034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2003 50 148 C2H2 Transcription Factor Family AT5G01860 37.500 6.51e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal4g2003 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2003 - - mtr:MTR_2g067740 282.722