Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1996 ATGTCAGAAACACTACGATTTGGTGGTGATGTTGCAGGAGAGAACAGAAAGCTAAAGCGAAAGATGGAAGATGCTATTGCTCCTGATTCAGAGGTGTCCCTTTCTTTGAGTTTAGGTGGAGGTGGAAGAGGAGGATCTTCGTTCAAATCCCTCAAGAGCCATGTGGAGCTGAGGGAATACCCATGTAATTTTTGCAACAAGAAGTTTTCAAGTTCACAAGCCTTGGGGGGACACCAAAATGCCCATAGGCGTGAAAGGTTTCTTTCAAGAATGGAGAAAGAAATTCAATTGGGAACTTTTGGACTTGGTGCTAATCATTTTTTTCCATACCCAAATCATCATCAGTATCCCTTTACAACTGGGTTGTCACCTTTTTATCATGGAATTGGATGGCCTCAATATATTGCCCCTACAAGCTATGGAAACCCATTTGGGATAATGACCAATCCTAATTGGGCTACTCAAACTCCACTCAACAATAACGTGGGATTTGAAAATTATGAGCTTAATAATCATTTGCAGATTCCATCATTTGGTGTTGCTCTTAATCATCATGTCCAAATGGAAAATAAAAATCAATATGACCCAAATAGCCACAAAAATTCGACCTCATTCCATGATTGGTCCCGTAACCTCTAG 639 0.4038 MSETLRFGGDVAGENRKLKRKMEDAIAPDSEVSLSLSLGGGGRGGSSFKSLKSHVELREYPCNFCNKKFSSSQALGGHQNAHRRERFLSRMEKEIQLGTFGLGANHFFPYPNHHQYPFTTGLSPFYHGIGWPQYIAPTSYGNPFGIMTNPNWATQTPLNNNVGFENYELNNHLQIPSFGVALNHHVQMENKNQYDPNSHKNSTSFHDWSRNL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1996 212 Pfam C2H2-type zinc finger 60 85 - -
Mal4g1996 212 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 205 - -
Mal4g1996 212 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Mal4g1996 212 Gene3D Classic Zinc Finger 46 99 - -
Mal4g1996 212 PANTHER ZINC FINGER PROTEIN JAGGED 1 205 IPR045320 GO:0003700
Mal4g1996 212 MobiDBLite consensus disorder prediction 190 212 - -
Mal4g1996 212 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Mal4g1996 212 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1996 Mal-Chr4 42121092 42121730 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1996 50 146 C2H2 Transcription Factor Family AT5G01860 37.255 4.65e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal4g1996 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1996 - - mtr:MTR_2g067740 295.049