Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1990 ATGTCAGAAACACTACGATTTGGTGGTGATGTTGCAGGAGAGAACAGAAAGCTAAAGCGAAAAATGGAAGATGCTATTGCTCCTGATTCAGAGGTGTCCCTTTCTTTGAGTTTAGGTGGAGGTGGAAGAGGAGGATCTTCGTTCAAATCCCTCAAGAGCCATGTGGAACTGAGGGAATACCCATGTAATTTTTGCAACAAGAAGTTTTCAAGTTCACAAGCCTTGGGGGGACACCAAAATGCCCATAGGCGTGAAAGGTTTCTTTCAAGAATGGAGAAAGAAATTCAATTGGGAACTTTTGGACTTGGTGCTCATCATTTTTGTCCATACCCAAATCATCATCAATATCCCTTTACAACTGGGTTGTCACCTTTTTATCATGGAATTGGATGGCCTCAATATGTTGCCCCTACAAGCTATGGAAACCCATTTGGGATAATGACCAATCCTAATTGGGCTACTCAAACTCCACTCAACAATGACGTGGGATTTGAAAATTATGAGCTTAATAATCATTTGCAGATTCCATCTTAA 534 0.4101 MSETLRFGGDVAGENRKLKRKMEDAIAPDSEVSLSLSLGGGGRGGSSFKSLKSHVELREYPCNFCNKKFSSSQALGGHQNAHRRERFLSRMEKEIQLGTFGLGAHHFCPYPNHHQYPFTTGLSPFYHGIGWPQYVAPTSYGNPFGIMTNPNWATQTPLNNDVGFENYELNNHLQIPS* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1990 177 Pfam C2H2-type zinc finger 60 85 - -
Mal4g1990 177 PANTHER ZINC FINGER PROTEIN JAGGED 1 177 IPR045320 GO:0003700
Mal4g1990 177 Gene3D Classic Zinc Finger 46 99 - -
Mal4g1990 177 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 177 - -
Mal4g1990 177 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Mal4g1990 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Mal4g1990 177 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1990 Mal-Chr4 41917618 41918151 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1990 56 132 C2H2 Transcription Factor Family AT1G67030 42.308 1.48e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal4g1990 zf-C2H2_6 1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1990 - - mtr:MTR_2g067740 254.988