Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1988 ATGTCAGAAACACTACGATTTGATGGTGATGTTGCAGGAGAGAACAGAAAGCTAAAGCGAAAGAGGGACGATGCTATTGCTCTTGATTCAGAGGTGTCCCTTTCTTTGAGTTTAGGTGGAGGTGGAAGAGGAGGATCTTCGTTCAAATCCCTCAAGAGCCATGACGAGCTGAGGGAATACCCATGTAATTTTTGCAACAAGAAGTTTTCAAGTTCACAAGCCTTGGGGGGACATCAAAATGTCCATAGGAGTGCAAGGTTTCTTTCAAGAATGAAGAAATTCAATGGGGAACATTTGGACTTGGTGCTCATCATTTCTGTCCATACCCAAATCATCATCAATATCCCTTTACAACTGGGTTGTCACCTTTTTATCATGGAATTGGATGGCCTCAATATGTTGCCCCTGCAAGCTATGGAAACCCATTTCGGATAA 435 0.4276 MSETLRFDGDVAGENRKLKRKRDDAIALDSEVSLSLSLGGGGRGGSSFKSLKSHDELREYPCNFCNKKFSSSQALGGHQNVHRSARFLSRMKKFNGEHLDLVLIISVHTQIIINIPLQLGCHLFIMELDGLNMLPLQAMETHFG* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1988 144 SUPERFAMILY beta-beta-alpha zinc fingers 58 86 IPR036236 -
Mal4g1988 144 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 94 - -
Mal4g1988 144 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Mal4g1988 144 Pfam C2H2-type zinc finger 60 84 - -
Mal4g1988 144 Gene3D Classic Zinc Finger 46 100 - -
Mal4g1988 144 PANTHER ZINC FINGER PROTEIN JAGGED 1 94 IPR045320 GO:0003700
Mal4g1988 144 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1988 Mal-Chr4 41746766 41747200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1988 3 90 C2H2 Transcription Factor Family AT1G24625 32.955 1.26e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal4g1988 zf-C2H2_6 7.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1988 - - mtr:MTR_2g067740 114.39