Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1987 ATGTCAGAAACACTACGATTTGGTGATGATGTTACTGGAGAGAACAGAAAGGTAAAGCGCAAAATGGATGATGCTATAGCTCCTGATTCAAAGGTGTCCCTTTCTTTGACTTTAGGTGGAGGTGGAAGAGGAGGAAAGAGACATGAGGAGCTAAGGGAATATCCATGTAATTTTTGCAACAAGAAGTTTTCAAGTTCACAAGCCTTGGGAGGACACCAAAATGCTCATAGGCGTGAAAGGATGCTTTCAAGAATGGAGAAAGAAATTCAATTGTGA 276 0.4094 MSETLRFGDDVTGENRKVKRKMDDAIAPDSKVSLSLTLGGGGRGGKRHEELREYPCNFCNKKFSSSQALGGHQNAHRRERMLSRMEKEIQL* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1987 91 Gene3D Classic Zinc Finger 42 91 - -
Mal4g1987 91 Pfam C2H2-type zinc finger 54 79 - -
Mal4g1987 91 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
Mal4g1987 91 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Mal4g1987 91 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 47 90 - -
Mal4g1987 91 PANTHER ZINC FINGER PROTEIN JAGGED 47 90 IPR045320 GO:0003700
Mal4g1987 91 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1987 Mal-Chr4 41473283 41473558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1987 52 91 C2H2 Transcription Factor Family AT5G01860 60.000 1.97e-12 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal4g1987 zf-C2H2_6 3.4e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1987 - - mtr:MTR_2g067740 127.487