Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1926 ATGGGAAAAGGAAGAGCACCATGTTGTGATAAGAGTCAAGTTAAGAGAGGACCTTGGAGCCCTGCTGAAGATCTTAAGCTTATAGCTTTTATTCAGAAATATGGTCATGAAAATTGGAGAGCTCTCCCTAAACAAGCAGGTCTTCAACGATGTGGGAAAAGTTGTCGTTTGAGATGGATCAATTATCTTAGGCCTGATTTAAAGAGAGGCAATTTTACAGCAGAGGAAGAGGAAACCATAATAAAGCTGCATAAGGCCTTGGGAAACAAATGGTCAAAGATTGCATCTTATTTGCCCGGTAGAACTGATAATGAGATCAAGAATGTGTGGAACACACATTTAAAGAAAAGACTTGTTGTCAAAAAATCAGATTCAAGTGGAGATGAATCCAAATTAGAATCATCAATAACCTCGTCCTCTTCATCAGAATCACTTTTATCGAATGACGTACCGATGAAAGATTCCGAAAAACAAGTATCCAATAATGAACTTGTTATCATCAATGAGAATCCAAAAGGGTCCTCAAATTCATTATCATCTTCAATTGAGTCTAATACTATCTTGAACTCAAGCCAAAATGTTGACAATAAACTAGAACAAGAATTGGCCTCTTTAGGATTTTATGATGTTGACAATATATTAGAAGACAATTTGATTGAAATACCATGGGAATCAGATTATGATCTTTGGAATTTTATTGACAACATTGGAACTTATCAATCAAATGTTGGTGAAGAGAGTGTTCAAGGTGTTGTTGAAGCAAAAAATTGTTCACATGATGAATTTGAGAATGAGTTTGGAGTAGTAGGTGAAATAAAGGAGTCAAACAACAAAGATGAGGTCCTACCAAAGAATAATGAAGTTGAACCAGAAATTGACCCTCATGAGGCATTTGATTTCAATGATATTATAATGCAAGATTCTGAATTAGATTTTGGTAATATTCAATTGTGGCCCTCCTTGCCTCAAAATGGTATTCCAAAAGTTTAA 990 0.3505 MGKGRAPCCDKSQVKRGPWSPAEDLKLIAFIQKYGHENWRALPKQAGLQRCGKSCRLRWINYLRPDLKRGNFTAEEEETIIKLHKALGNKWSKIASYLPGRTDNEIKNVWNTHLKKRLVVKKSDSSGDESKLESSITSSSSSESLLSNDVPMKDSEKQVSNNELVIINENPKGSSNSLSSSIESNTILNSSQNVDNKLEQELASLGFYDVDNILEDNLIEIPWESDYDLWNFIDNIGTYQSNVGEESVQGVVEAKNCSHDEFENEFGVVGEIKESNNKDEVLPKNNEVEPEIDPHEAFDFNDIIMQDSELDFGNIQLWPSLPQNGIPKV* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1926 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Mal4g1926 329 MobiDBLite consensus disorder prediction 130 157 - -
Mal4g1926 329 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Mal4g1926 329 Gene3D - 16 68 - -
Mal4g1926 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Mal4g1926 329 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Mal4g1926 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 247 - -
Mal4g1926 329 PANTHER TRANSCRIPTION FACTOR MYB72 1 247 - -
Mal4g1926 329 CDD SANT 71 114 IPR001005 -
Mal4g1926 329 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Mal4g1926 329 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Mal4g1926 329 MobiDBLite consensus disorder prediction 126 157 - -
Mal4g1926 329 Gene3D - 70 143 - -
Mal4g1926 329 SMART sant 68 116 IPR001005 -
Mal4g1926 329 SMART sant 15 65 IPR001005 -
Mal4g1926 329 CDD SANT 18 63 IPR001005 -
Mal4g1926 329 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1926 Mal-Chr4 37773835 37776993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1926 1 250 MYB Transcription Factor Family AT1G79180 47.079 4.17e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal4g1926 Myb_DNA-binding 9.4e-14 CL0123