Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1874 ATGGCCGTTGAGGCTCGCCATCTTCACCTCTTTTCCCCTCAACTCATAACCAACAGAGAAATGATGAACCCGGTTGAAATAAACACCAACAACAACATCTACAACATGTCACAAATGGGTTATTCATCAATTCCACCATCTTCCATTAAAACCACCGCAACAGAAACTATGATTCTACCACCGTACAACTCAATAGCCACCGATTCATTACCTCAGAAAACAGCTATGAACTCAGATAGTGGTCTCACCTATAACGTTTCATTAAGAAAACGTTCTAGAGATTCAAGAGACTATTCAAATTCCATCAATTTCCCTTACCCAAATTCCTATATTTCTCCTTCAACACCACAACAAAACAATCACAGAAGTTGTGCATCTTCATCTTTTTCTTTTCTTGGTGAAGACATTTCCCTTCAGATCCAACGGCAACAACTTGATATTGATCAACTCATTTCACAACAAATGGAGAAAGTGAAATATGAGATTGAAGAAAAGCGTAAGAGACAAGCGATGAGATTGATTCAAGCAATTGATATGAGTGTGACAAAGAGATTGAAGGCTAAAGAAGAAGAAATAGAGAAAATTGGGAAAATGAATTGGGCTTTAGAAGAAAGAGTTAAGTCACTTTGCATGGAGAATCAAATTTGGCGTGATTTAGCTCAAAGCAATGAAGCAACAGCCAATGCTCTAAGGTCCAATCTCGAACAGCTTCTTCAGCAACGCGCCGCGGCCGGAGATGATAACGGAGGAGATACCGTTGCTCCGGCCGGGCCGGTTGCATTGATGGATGATGCAGAGTCATGTTGTGATAGCAATGAGAGTATCAATGGTGAAGATGGAGTTGATCAGTGGAGAAATGTGGGGGGGCATAATGGTAAAAATGTGGTGAGAAATGTTGTTGGTGATAGTGGAAGTGGTGGAAGCAATTTTGTGAATAGCATGAAACTGTGCAGTAACTGTGGGAAAGATGAATCATGTGTGTTGATTTTGCCTTGTAGACATCTTTGTTTATGTGCTGTTTGTGGGTCTTCTCTTCACATTTGTCCTATTTGTAAATCTTTCAAAACTGCTAGTATCCATGTTAACATGTCATGA 1095 0.4009 MAVEARHLHLFSPQLITNREMMNPVEINTNNNIYNMSQMGYSSIPPSSIKTTATETMILPPYNSIATDSLPQKTAMNSDSGLTYNVSLRKRSRDSRDYSNSINFPYPNSYISPSTPQQNNHRSCASSSFSFLGEDISLQIQRQQLDIDQLISQQMEKVKYEIEEKRKRQAMRLIQAIDMSVTKRLKAKEEEIEKIGKMNWALEERVKSLCMENQIWRDLAQSNEATANALRSNLEQLLQQRAAAGDDNGGDTVAPAGPVALMDDAESCCDSNESINGEDGVDQWRNVGGHNGKNVVRNVVGDSGSGGSNFVNSMKLCSNCGKDESCVLILPCRHLCLCAVCGSSLHICPICKSFKTASIHVNMS* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1874 364 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 363 IPR017066 -
Mal4g1874 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 364 IPR013083 -
Mal4g1874 364 PIRSF SBP1_RNase_bind 1 364 IPR017066 -
Mal4g1874 364 Coils Coil 185 205 - -
Mal4g1874 364 Coils Coil 220 247 - -
Mal4g1874 364 ProSiteProfiles Zinc finger RING-type profile. 317 352 IPR001841 -
Mal4g1874 364 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 363 - -
Mal4g1874 364 Pfam Zinc finger, C3HC4 type (RING finger) 315 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1874 Mal-Chr4 35733321 35734715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1874 316 353 Miscellaneous Gene Families AT2G21380 39.474 3.65e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1874 K19042 - qsu:112024867 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1874 4 35733321 35734715 Mal4g1874 4 35733321 35734715 ECH
Mal4g1874 4 35733321 35734715 Mal5g2201 5 54382734 54383898 PCT